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Started by upstream project "BIOFORMATS-test-repo" build number 89 originally caused by: Started by upstream project "Trigger" build number 100 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3159803829548943058.sh + '[' psd = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13718_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:26:29,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:26:29,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:26:29,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:29,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:26:29,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:26:29,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:26:29,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:26:29,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:29,147 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:26:29,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:26:29,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:26:29,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:26:29,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:26:29,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:26:29,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:26:29,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:26:29,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:26:29,431 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:26:29,431 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:26:29,432 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:26:29,432 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:26:29,433 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:26:29,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-11 02:26:29,447] [main] java.version = 11.0.16 [testng] 02:26:29,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:26:29,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:29,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-11_02-26-29.log] [testng] 02:26:29,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-11 02:26:29,510] [main] testng.directory = /data [testng] [2024-06-11 02:26:29,511] [main] testng.configDirectory = /config [testng] [2024-06-11 02:26:29,521] [main] testng.multiplier = 1.0 [testng] [2024-06-11 02:26:29,522] [main] testng.in-memory = false [testng] [2024-06-11 02:26:29,522] [main] testng.allow-missing = false [testng] [2024-06-11 02:26:29,523] [main] user.language = en [testng] [2024-06-11 02:26:29,523] [main] user.country = ${user.country} [testng] [2024-06-11 02:26:29,523] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-11 02:26:29,945] [main] ---------------------------------------- [testng] [2024-06-11 02:26:29,945] [main] Total files: 18 [testng] [2024-06-11 02:26:29,945] [main] Scan time: 0.422 s (23 ms/file) [testng] [2024-06-11 02:26:29,945] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-11 02:26:31,775] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:26:31,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:26:31,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-11_02-26-31.log] [testng] 02:26:31,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e87b0d4 - End of configuration. [testng] [2024-06-11 02:26:31,806] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd: [testng] 02:26:31,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:26:31,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-11_02-26-31.log] [testng] 02:26:31,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ee2ce0 - End of configuration. [testng] [2024-06-11 02:26:31,840] [pool-1-thread-11] Initializing /data/misc/smilie.psd: [testng] 02:26:31,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:26:31,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-11_02-26-31.log] [testng] 02:26:31,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d4a1c7e - End of configuration. [testng] [2024-06-11 02:26:31,854] [pool-1-thread-10] Initializing /data/ascb/423.psd: [testng] 02:26:31,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:26:31,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-11_02-26-31.log] [testng] 02:26:31,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647a9aac - End of configuration. [testng] [2024-06-11 02:26:31,917] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:26:31,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:26:31,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-11_02-26-31.log] [testng] 02:26:31,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ecad6f7 - End of configuration. [testng] [2024-06-11 02:26:31,961] [pool-1-thread-8] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:26:31,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:26:31,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-11_02-26-31.log] [testng] 02:26:31,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c5e775c - End of configuration. [testng] [2024-06-11 02:26:32,001] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:26:32,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:26:32,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:32,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-11_02-26-32.log] [testng] 02:26:32,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1554d439 - End of configuration. [testng] [2024-06-11 02:26:32,064] [pool-1-thread-6] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:26:32,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:26:32,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:32,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-11_02-26-32.log] [testng] 02:26:32,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8bbc0f - End of configuration. [testng] [2024-06-11 02:26:32,107] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:26:32,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:26:32,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:32,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-11_02-26-32.log] [testng] 02:26:32,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72adcbcc - End of configuration. [testng] [2024-06-11 02:26:32,170] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] 02:26:32,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:26:32,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:32,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-11_02-26-32.log] [testng] 02:26:32,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6689024a - End of configuration. [testng] [2024-06-11 02:26:32,261] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] 02:26:32,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:26:32,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:32,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-11_02-26-32.log] [testng] 02:26:32,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dbc8d14 - End of configuration. [testng] [2024-06-11 02:26:32,305] [pool-1-thread-2] Initializing /data/ascb/607x.psd: [testng] 02:26:32,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:26:32,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:32,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-11_02-26-32.log] [testng] 02:26:32,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba4306b - End of configuration. [testng] [2024-06-11 02:26:36,038] [pool-1-thread-4] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-06-11 02:26:36,051] [pool-1-thread-11] Initializing /data/misc/venus_composite.psd: [testng] [2024-06-11 02:26:36,065] [pool-1-thread-12] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-06-11 02:26:36,074] [pool-1-thread-6] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-06-11 02:26:36,085] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-06-11 02:26:36,113] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS