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Started by upstream project "BIOFORMATS-test-repo" build number 91 originally caused by: Started by upstream project "Trigger" build number 102 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5141651608079295466.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13929_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:23:02,816 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:02,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:23:02,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:02,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:02,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:02,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:02,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:02,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:03,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:03,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:03,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:03,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:03,048 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:03,049 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:03,049 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:03,049 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:03,049 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:23:03,050 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:23:03,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-13 01:23:03,060] [main] java.version = 21 [testng] 01:23:03,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:03,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:03,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-13_01-23-03.log] [testng] 01:23:03,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-13 01:23:03,117] [main] testng.directory = /data [testng] [2024-06-13 01:23:03,117] [main] testng.configDirectory = /config [testng] [2024-06-13 01:23:03,126] [main] testng.multiplier = 1.0 [testng] [2024-06-13 01:23:03,127] [main] testng.in-memory = false [testng] [2024-06-13 01:23:03,127] [main] testng.allow-missing = false [testng] [2024-06-13 01:23:03,127] [main] user.language = en [testng] [2024-06-13 01:23:03,127] [main] user.country = ${user.country} [testng] [2024-06-13 01:23:03,127] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-13 01:23:04,262] [main] ---------------------------------------- [testng] [2024-06-13 01:23:04,262] [main] Total files: 21 [testng] [2024-06-13 01:23:04,262] [main] Scan time: 1.134 s (54 ms/file) [testng] [2024-06-13 01:23:04,263] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-13 01:23:06,571] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 01:23:06,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:06,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-13_01-23-06.log] [testng] 01:23:06,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4763f8a9 - End of configuration. [testng] [2024-06-13 01:23:06,636] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 01:23:06,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:06,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-13_01-23-06.log] [testng] 01:23:06,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522ef87 - End of configuration. [testng] [2024-06-13 01:23:06,711] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] 01:23:06,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:06,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-13_01-23-06.log] [testng] 01:23:06,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a118fae - End of configuration. [testng] [2024-06-13 01:23:06,758] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 01:23:06,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:06,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-13_01-23-06.log] [testng] 01:23:06,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2765e0c - End of configuration. [testng] [2024-06-13 01:23:06,824] [pool-1-thread-9] Initializing /data/stefan/001_q06.txt: [testng] 01:23:06,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:06,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-13_01-23-06.log] [testng] 01:23:06,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4df5ba - End of configuration. [testng] [2024-06-13 01:23:06,855] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt: [testng] 01:23:06,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:06,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-13_01-23-06.log] [testng] 01:23:06,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595b920f - End of configuration. [testng] [2024-06-13 01:23:06,882] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt: [testng] 01:23:06,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:06,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-13_01-23-06.log] [testng] 01:23:06,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d396cc - End of configuration. [testng] [2024-06-13 01:23:06,912] [pool-1-thread-6] Initializing /data/stefan/001_q10.txt: [testng] 01:23:06,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:06,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-13_01-23-06.log] [testng] 01:23:06,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334054d - End of configuration. [testng] [2024-06-13 01:23:06,981] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 01:23:06,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:06,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:06,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-13_01-23-06.log] [testng] 01:23:06,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a158e7 - End of configuration. [testng] [2024-06-13 01:23:07,021] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 01:23:07,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:07,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:07,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-13_01-23-07.log] [testng] 01:23:07,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43a72390 - End of configuration. [testng] [2024-06-13 01:23:07,105] [pool-1-thread-3] Initializing /data/stefan/001_q18.txt: [testng] 01:23:07,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:07,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:07,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-13_01-23-07.log] [testng] 01:23:07,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4d909c - End of configuration. [testng] [2024-06-13 01:23:07,193] [pool-1-thread-2] Initializing /data/stefan/001_q01.txt: [testng] 01:23:07,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:07,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:07,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-13_01-23-07.log] [testng] 01:23:07,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19dcf47c - End of configuration. [testng] [2024-06-13 01:23:10,115] [pool-1-thread-11] Initializing /data/stefan/001_q05.txt: [testng] [2024-06-13 01:23:10,155] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt: [testng] [2024-06-13 01:23:10,252] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] [2024-06-13 01:23:10,278] [pool-1-thread-1] Initializing /data/stefan/001_q07.txt: [testng] [2024-06-13 01:23:10,376] [pool-1-thread-6] Initializing /data/stefan/001_q09.txt: [testng] [2024-06-13 01:23:10,463] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS