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Started by upstream project "BIOFORMATS-test-repo" build number 91 originally caused by: Started by upstream project "Trigger" build number 102 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17189747200260872556.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_13998_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:56:55,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:56:55,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:56:55,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:55,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:55,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:56:55,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:56:55,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:56:55,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:55,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:55,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:56:55,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:56:55,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:56:55,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:56:55,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:56:55,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:56:55,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:56:55,244 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:56:55,244 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:56:55,244 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:56:55,244 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:56:55,245 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:56:55,245 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:56:55,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-13 01:56:55,255] [main] java.version = 21 [testng] 01:56:55,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:56:55,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:55,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-13_01-56-55.log] [testng] 01:56:55,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-13 01:56:55,307] [main] testng.directory = /data [testng] [2024-06-13 01:56:55,308] [main] testng.configDirectory = /config [testng] [2024-06-13 01:56:55,317] [main] testng.multiplier = 1.0 [testng] [2024-06-13 01:56:55,318] [main] testng.in-memory = false [testng] [2024-06-13 01:56:55,318] [main] testng.allow-missing = false [testng] [2024-06-13 01:56:55,318] [main] user.language = en [testng] [2024-06-13 01:56:55,318] [main] user.country = ${user.country} [testng] [2024-06-13 01:56:55,318] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-13 02:04:22,379] [main] ---------------------------------------- [testng] [2024-06-13 02:04:22,379] [main] Total files: 7329 [testng] [2024-06-13 02:04:22,379] [main] Scan time: 447.061 s (60 ms/file) [testng] [2024-06-13 02:04:22,380] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-13 02:07:39,588] [pool-1-thread-1] Initializing /data/josh/2101to600astk.stk: [testng] 02:07:39,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:39,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:39,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-13_02-07-39.log] [testng] 02:07:39,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ea20de3 - End of configuration. [testng] [2024-06-13 02:07:47,562] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001: [testng] 02:07:47,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:47,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-13_02-07-47.log] [testng] 02:07:47,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ccc4c3 - End of configuration. [testng] [2024-06-13 02:07:47,622] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] 02:07:47,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:47,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-13_02-07-47.log] [testng] 02:07:47,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@234eb2c8 - End of configuration. [testng] [2024-06-13 02:07:47,702] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:07:47,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:47,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-13_02-07-47.log] [testng] 02:07:47,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e1bcc4 - End of configuration. [testng] [2024-06-13 02:07:47,778] [pool-1-thread-9] Initializing /data/heiko/sample_2x2.stk: [testng] 02:07:47,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:47,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-13_02-07-47.log] [testng] 02:07:47,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e07a1e - End of configuration. [testng] [2024-06-13 02:07:47,863] [pool-1-thread-8] Initializing /data/ascb/C9 Stack.tif: [testng] 02:07:47,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:47,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-13_02-07-47.log] [testng] 02:07:47,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66288027 - End of configuration. [testng] [2024-06-13 02:07:47,946] [pool-1-thread-7] Initializing /data/qa-30870/220209_posit5.tif: [testng] 02:07:47,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:47,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-13_02-07-47.log] [testng] 02:07:47,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d683223 - End of configuration. [testng] [2024-06-13 02:07:48,008] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:07:48,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:48,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:48,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-13_02-07-48.log] [testng] 02:07:48,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5192add8 - End of configuration. [testng] [2024-06-13 02:07:48,032] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 02:07:48,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:48,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:48,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-13_02-07-48.log] [testng] 02:07:48,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dae8a9e - End of configuration. [testng] [2024-06-13 02:07:48,086] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 02:07:48,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:48,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:48,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-13_02-07-48.log] [testng] 02:07:48,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66508384 - End of configuration. [testng] [2024-06-13 02:07:48,158] [pool-1-thread-4] Used files list does not include base file [testng] [2024-06-13 02:07:48,162] [pool-1-thread-3] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:07:48,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:48,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:48,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-13_02-07-48.log] [testng] 02:07:48,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3903fe - End of configuration. [testng] [2024-06-13 02:07:48,451] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:07:48,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:48,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:48,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-13_02-07-48.log] [testng] 02:07:48,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10c3e620 - End of configuration. [testng] [2024-06-13 02:07:49,593] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-13 02:07:49,885] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-13 02:07:50,165] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-06-13 02:07:51,185] [pool-1-thread-9] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-13 02:07:51,592] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-13 02:07:51,611] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-13 02:07:51,613] [pool-1-thread-11] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-13 02:07:51,769] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-13 02:07:51,838] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-13 02:07:51,841] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-13 02:07:51,940] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-06-13 02:07:52,044] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-13 02:07:52,638] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-13 02:07:52,878] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-13 02:07:53,604] [pool-1-thread-2] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-13 02:07:53,727] [pool-1-thread-5] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-13 02:07:53,789] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-13 02:07:55,484] [pool-1-thread-6] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-13 02:07:57,862] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-13 02:07:58,575] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-13 02:07:58,653] [pool-1-thread-7] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-13 02:07:59,519] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-13 02:07:59,616] [pool-1-thread-11] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-13 02:07:59,723] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-13 02:08:00,022] [pool-1-thread-8] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-06-13 02:08:00,429] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-13 02:08:00,694] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-13 02:08:00,814] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-13 02:08:00,882] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-13 02:08:01,387] [pool-1-thread-2] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-06-13 02:08:01,654] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-13 02:08:01,713] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-13 02:08:01,930] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-13 02:08:01,998] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-13 02:08:02,300] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-13 02:08:02,336] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-13 02:08:02,367] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:02,549] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-06-13 02:08:02,636] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-13 02:08:02,842] [pool-1-thread-11] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-13 02:08:03,543] [pool-1-thread-12] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-13 02:08:04,400] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-13 02:08:05,138] [pool-1-thread-12] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-13 02:08:05,306] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-13 02:08:05,607] [pool-1-thread-8] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-13 02:08:05,685] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-13 02:08:05,783] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:06,067] [pool-1-thread-2] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-13 02:08:06,566] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-06-13 02:08:08,930] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-13 02:08:09,092] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-13 02:08:10,383] [pool-1-thread-5] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-13 02:08:10,507] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-13 02:08:10,795] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-13 02:08:11,648] [pool-1-thread-2] Initializing /data/samples/zseries.stk: [testng] [2024-06-13 02:08:11,712] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-13 02:08:12,077] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-13 02:08:12,165] [pool-1-thread-8] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-13 02:08:12,372] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-13 02:08:12,463] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-13 02:08:12,538] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-13 02:08:15,373] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-06-13 02:08:15,424] [pool-1-thread-9] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-13 02:08:16,070] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-13 02:08:16,130] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-13 02:08:16,192] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-13 02:08:17,249] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-13 02:08:18,288] [pool-1-thread-6] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-06-13 02:08:18,765] [pool-1-thread-11] Initializing /data/thomas/test.tif: [testng] [2024-06-13 02:08:18,956] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-13 02:08:19,167] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-13 02:08:19,746] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2024-06-13 02:08:21,156] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-13 02:08:21,670] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-06-13 02:08:22,829] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-13 02:08:22,844] [pool-1-thread-5] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-13 02:08:22,874] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-13 02:08:23,153] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:23,537] [pool-1-thread-6] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-13 02:08:25,828] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-13 02:08:26,178] [pool-1-thread-10] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-13 02:08:26,320] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:26,896] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-13 02:08:27,399] [pool-1-thread-11] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-13 02:08:28,118] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-06-13 02:08:28,472] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-06-13 02:08:29,143] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-06-13 02:08:29,210] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-06-13 02:08:29,506] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-13 02:08:29,928] [pool-1-thread-5] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-13 02:08:30,303] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:30,631] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:30,758] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-13 02:08:30,863] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-06-13 02:08:31,574] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-06-13 02:08:31,682] [pool-1-thread-4] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-13 02:08:32,159] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-13 02:08:32,566] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-13 02:08:32,751] [pool-1-thread-10] Initializing /data/josh/2101to600e.stk: [testng] [2024-06-13 02:08:35,565] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-06-13 02:08:35,621] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-13 02:08:35,623] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-13 02:08:37,234] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-13 02:08:37,301] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-06-13 02:08:37,360] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-13 02:08:37,363] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:37,426] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:37,541] [pool-1-thread-5] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-13 02:08:38,660] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-13 02:08:39,584] [pool-1-thread-9] Initializing /data/samples/10xcalib.stk: [testng] [2024-06-13 02:08:39,630] [pool-1-thread-10] Initializing 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[pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-13 02:08:44,837] [pool-1-thread-2] Initializing /data/samples/diatoms3d.stk: [testng] [2024-06-13 02:08:45,002] [pool-1-thread-10] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-13 02:08:45,194] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-13 02:08:45,582] [pool-1-thread-2] Initializing /data/ascb/golgi marker.tif: [testng] [2024-06-13 02:08:45,764] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-13 02:08:46,352] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-13 02:08:47,037] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-13 02:08:47,083] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-13 02:08:47,377] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-13 02:08:48,419] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:48,503] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-13 02:08:49,038] [pool-1-thread-12] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-13 02:08:49,356] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-13 02:08:49,465] [pool-1-thread-2] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-13 02:08:49,984] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:50,061] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-13 02:08:50,080] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-13 02:08:50,173] [pool-1-thread-9] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-13 02:08:50,496] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-13 02:08:50,955] [pool-1-thread-4] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-13 02:08:51,029] [pool-1-thread-12] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-13 02:08:51,500] [pool-1-thread-9] Initializing /data/samples/zserEight.stk: [testng] [2024-06-13 02:08:51,826] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-13 02:08:52,065] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-13 02:08:52,296] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-06-13 02:08:52,372] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-13 02:08:52,373] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-06-13 02:08:52,484] [pool-1-thread-11] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-13 02:08:52,758] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-13 02:08:52,984] [pool-1-thread-12] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-13 02:08:53,263] [pool-1-thread-4] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-13 02:08:54,008] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-13 02:08:54,152] [pool-1-thread-2] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-06-13 02:08:54,295] [pool-1-thread-9] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-06-13 02:08:54,691] [pool-1-thread-4] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-13 02:08:55,401] [pool-1-thread-10] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-13 02:08:55,575] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:55,682] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-13 02:08:56,132] [pool-1-thread-9] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-13 02:08:56,240] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:56,632] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-13 02:08:56,875] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-13 02:08:57,124] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:08:57,234] [pool-1-thread-4] Initializing /data/samples/zser24.stk: [testng] [2024-06-13 02:08:57,629] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-06-13 02:08:57,798] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-06-13 02:08:58,090] [pool-1-thread-1] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-06-13 02:08:58,375] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-13 02:08:58,719] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-13 02:08:58,765] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-13 02:08:59,050] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-06-13 02:08:59,567] [pool-1-thread-11] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-13 02:08:59,625] [pool-1-thread-8] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-13 02:09:00,554] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-13 02:09:00,646] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-06-13 02:09:00,726] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-13 02:09:01,273] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-13 02:09:01,649] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-13 02:09:01,674] [pool-1-thread-4] Used files list does not include base file [testng] [2024-06-13 02:09:01,840] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-13 02:09:02,156] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-06-13 02:09:02,253] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-13 02:09:02,323] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-13 02:09:02,324] [pool-1-thread-2] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-13 02:09:09,595] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-13 02:09:10,167] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-13 02:09:10,237] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-06-13 02:09:10,315] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-13 02:09:10,731] [pool-1-thread-5] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-13 02:09:10,770] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-06-13 02:09:11,173] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-13 02:09:11,302] [pool-1-thread-12] Initializing /data/grant/X.STK: [testng] [2024-06-13 02:09:11,506] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-13 02:09:11,652] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-13 02:09:12,127] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-13 02:09:12,208] [pool-1-thread-4] Initializing /data/david/tl4.tif: [testng] [2024-06-13 02:09:12,685] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-13 02:09:12,939] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-13 02:09:13,830] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-13 02:09:13,956] [pool-1-thread-11] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-13 02:09:14,065] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-13 02:09:14,163] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-13 02:09:14,779] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-13 02:09:14,849] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 58 seconds Finished: SUCCESS