Started by upstream project "BIOFORMATS-test-repo" build number 92 originally caused by: Started by upstream project "Trigger" build number 103 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3578493800042443483.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14078_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:21:16,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:16,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:21:16,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:16,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:16,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:16,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:16,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:16,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:16,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:16,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:16,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:16,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:17,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:17,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:17,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:17,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:17,095 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:17,095 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:17,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:17,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:17,095 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:21:17,096 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:21:17,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-14 01:21:17,106] [main] java.version = 1.8.0_342 [testng] 01:21:17,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:17,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:17,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_01-21-17.log] [testng] 01:21:17,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-14 01:21:17,158] [main] testng.directory = /data [testng] [2024-06-14 01:21:17,158] [main] testng.configDirectory = /config [testng] [2024-06-14 01:21:17,170] [main] testng.multiplier = 1.0 [testng] [2024-06-14 01:21:17,170] [main] testng.in-memory = false [testng] [2024-06-14 01:21:17,170] [main] testng.allow-missing = false [testng] [2024-06-14 01:21:17,170] [main] user.language = en [testng] [2024-06-14 01:21:17,170] [main] user.country = ${user.country} [testng] [2024-06-14 01:21:17,170] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-14 01:21:17,717] [main] ---------------------------------------- [testng] [2024-06-14 01:21:17,717] [main] Total files: 36 [testng] [2024-06-14 01:21:17,717] [main] Scan time: 0.547 s (15 ms/file) [testng] [2024-06-14 01:21:17,717] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-14 01:21:19,511] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 01:21:19,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:19,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_01-21-19.log] [testng] 01:21:19,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368c5b1f - End of configuration. [testng] [2024-06-14 01:21:19,552] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 01:21:19,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:19,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_01-21-19.log] [testng] 01:21:19,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bcd574d - End of configuration. [testng] [2024-06-14 01:21:19,558] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 01:21:19,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:19,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_01-21-19.log] [testng] 01:21:19,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66549e - End of configuration. [testng] [2024-06-14 01:21:19,565] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 01:21:19,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:19,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_01-21-19.log] [testng] 01:21:19,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efa6fcf - End of configuration. [testng] [2024-06-14 01:21:19,571] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:21:19,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:19,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_01-21-19.log] [testng] 01:21:19,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration. [testng] [2024-06-14 01:21:19,576] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 01:21:19,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:19,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_01-21-19.log] [testng] 01:21:19,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e92b8f6 - End of configuration. [testng] [2024-06-14 01:21:19,581] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 01:21:19,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:19,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_01-21-19.log] [testng] 01:21:19,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@779f408e - End of configuration. [testng] [2024-06-14 01:21:19,586] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 01:21:19,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:19,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_01-21-19.log] [testng] 01:21:19,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647953af - End of configuration. [testng] [2024-06-14 01:21:19,591] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 01:21:19,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:19,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_01-21-19.log] [testng] 01:21:19,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0cbf14 - End of configuration. [testng] [2024-06-14 01:21:19,597] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 01:21:19,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:19,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_01-21-19.log] [testng] 01:21:19,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb9dc74 - End of configuration. [testng] [2024-06-14 01:21:19,603] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 01:21:19,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:19,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_01-21-19.log] [testng] 01:21:19,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a9500a - End of configuration. [testng] [2024-06-14 01:21:19,608] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 01:21:19,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:19,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:19,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_01-21-19.log] [testng] 01:21:19,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfa8e5f - End of configuration. [testng] [2024-06-14 01:21:21,324] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-06-14 01:21:21,328] [pool-1-thread-1] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-06-14 01:21:21,331] [pool-1-thread-2] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-06-14 01:21:21,334] [pool-1-thread-10] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-06-14 01:21:21,337] [pool-1-thread-5] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-06-14 01:21:21,343] [pool-1-thread-3] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-06-14 01:21:21,346] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-06-14 01:21:21,353] [pool-1-thread-12] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-06-14 01:21:21,357] [pool-1-thread-9] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-06-14 01:21:21,360] [pool-1-thread-7] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-06-14 01:21:21,364] [pool-1-thread-4] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-06-14 01:21:21,369] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-06-14 01:21:21,675] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-06-14 01:21:21,679] [pool-1-thread-7] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-06-14 01:21:21,684] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-06-14 01:21:21,687] [pool-1-thread-2] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-06-14 01:21:21,690] [pool-1-thread-6] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-06-14 01:21:21,714] [pool-1-thread-1] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-06-14 01:21:21,717] [pool-1-thread-12] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-06-14 01:21:21,723] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-06-14 01:21:21,826] [pool-1-thread-2] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-06-14 01:21:21,839] [pool-1-thread-10] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-06-14 01:21:21,843] [pool-1-thread-9] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS