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Started by upstream project "BIOFORMATS-test-repo" build number 92 originally caused by: Started by upstream project "Trigger" build number 103 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7648465573949743430.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14162_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:59:05,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:59:05,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:59:05,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:05,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:05,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:59:05,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:59:05,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:59:05,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:05,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:05,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:59:05,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:59:05,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:59:06,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:59:06,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:59:06,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:59:06,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:59:06,124 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:59:06,124 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:59:06,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:59:06,125 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:59:06,125 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:59:06,125 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:59:06,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-14 01:59:06,135] [main] java.version = 1.8.0_342 [testng] 01:59:06,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:59:06,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:06,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_01-59-06.log] [testng] 01:59:06,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-14 01:59:06,186] [main] testng.directory = /data [testng] [2024-06-14 01:59:06,186] [main] testng.configDirectory = /config [testng] [2024-06-14 01:59:06,197] [main] testng.multiplier = 1.0 [testng] [2024-06-14 01:59:06,198] [main] testng.in-memory = false [testng] [2024-06-14 01:59:06,198] [main] testng.allow-missing = false [testng] [2024-06-14 01:59:06,198] [main] user.language = en [testng] [2024-06-14 01:59:06,198] [main] user.country = ${user.country} [testng] [2024-06-14 01:59:06,198] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-14 02:06:19,993] [main] ---------------------------------------- [testng] [2024-06-14 02:06:19,993] [main] Total files: 7329 [testng] [2024-06-14 02:06:19,993] [main] Scan time: 433.795 s (59 ms/file) [testng] [2024-06-14 02:06:19,994] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-14 02:09:22,931] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 02:09:22,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:22,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:22,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_02-09-22.log] [testng] 02:09:22,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bdfddcb - End of configuration. [testng] [2024-06-14 02:09:23,012] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 02:09:23,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:09:23,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_02-09-23.log] [testng] 02:09:23,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e3a6cb - End of configuration. [testng] [2024-06-14 02:09:23,096] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 02:09:23,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:09:23,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_02-09-23.log] [testng] 02:09:23,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@534a2de9 - End of configuration. [testng] [2024-06-14 02:09:23,150] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:09:23,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:09:23,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_02-09-23.log] [testng] 02:09:23,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f279e32 - End of configuration. [testng] [2024-06-14 02:09:23,215] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 02:09:23,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:09:23,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_02-09-23.log] [testng] 02:09:23,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3716cb10 - End of configuration. [testng] [2024-06-14 02:09:23,349] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 02:09:23,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:23,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_02-09-23.log] [testng] 02:09:23,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cf298c0 - End of configuration. [testng] [2024-06-14 02:09:23,373] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 02:09:23,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:23,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_02-09-23.log] [testng] 02:09:23,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7042726 - End of configuration. [testng] [2024-06-14 02:09:23,445] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 02:09:23,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:23,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_02-09-23.log] [testng] 02:09:23,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20dcab60 - End of configuration. [testng] [2024-06-14 02:09:23,535] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 02:09:23,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:23,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_02-09-23.log] [testng] 02:09:23,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@157ca07e - End of configuration. [testng] [2024-06-14 02:09:23,588] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:09:23,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:23,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_02-09-23.log] [testng] 02:09:23,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b0323b4 - End of configuration. [testng] [2024-06-14 02:09:23,700] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:09:23,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:23,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_02-09-23.log] [testng] 02:09:23,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f094187 - End of configuration. [testng] [2024-06-14 02:09:23,830] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 02:09:23,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:23,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_02-09-23.log] [testng] 02:09:23,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c6036c3 - End of configuration. [testng] [2024-06-14 02:09:26,597] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-14 02:09:27,314] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-14 02:09:27,377] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-14 02:09:28,859] [pool-1-thread-4] Initializing /data/samples/10xcalib.stk: [testng] [2024-06-14 02:09:29,172] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-14 02:09:29,750] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-06-14 02:09:29,803] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-14 02:09:29,949] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-14 02:09:29,978] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-06-14 02:09:30,250] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-14 02:09:30,393] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-14 02:09:30,826] [pool-1-thread-11] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-14 02:09:31,137] [pool-1-thread-2] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-06-14 02:09:31,357] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-06-14 02:09:31,408] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-14 02:09:31,409] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-14 02:09:31,748] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-14 02:09:32,307] [pool-1-thread-2] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-14 02:09:34,947] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-14 02:09:35,436] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-14 02:09:35,835] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-14 02:09:36,105] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-14 02:09:36,256] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-14 02:09:36,262] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-14 02:09:37,112] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-14 02:09:37,150] [pool-1-thread-4] Used files list does not include base file [testng] [2024-06-14 02:09:37,215] [pool-1-thread-10] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-14 02:09:37,652] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-14 02:09:37,713] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-14 02:09:37,845] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-14 02:09:37,929] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-14 02:09:37,946] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-14 02:09:38,402] [pool-1-thread-5] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-06-14 02:09:38,545] [pool-1-thread-11] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-14 02:09:38,604] [pool-1-thread-1] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-14 02:09:39,260] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-14 02:09:39,326] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-14 02:09:39,509] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-14 02:09:39,848] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-14 02:09:39,864] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-14 02:09:39,866] [pool-1-thread-11] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-06-14 02:09:48,696] [pool-1-thread-6] Initializing /data/josh/2101to800.stk: [testng] [2024-06-14 02:09:49,465] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-14 02:09:49,737] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-14 02:09:49,775] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-06-14 02:09:49,873] [pool-1-thread-8] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-14 02:09:50,508] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-14 02:09:50,611] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-14 02:09:50,670] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-14 02:09:51,087] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-06-14 02:09:51,484] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:09:51,588] [pool-1-thread-12] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-14 02:09:52,889] [pool-1-thread-8] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-14 02:09:53,611] [pool-1-thread-1] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-14 02:09:53,901] [pool-1-thread-5] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-14 02:09:56,285] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:09:56,731] [pool-1-thread-1] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-14 02:09:57,249] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:09:57,302] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:09:57,519] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-14 02:09:57,544] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-14 02:09:57,666] [pool-1-thread-10] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-14 02:09:58,553] [pool-1-thread-7] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-14 02:09:58,860] [pool-1-thread-1] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-14 02:09:59,919] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-06-14 02:10:00,007] [pool-1-thread-9] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-14 02:10:00,196] [pool-1-thread-9] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-14 02:10:00,344] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-14 02:10:00,370] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-14 02:10:00,475] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:01,288] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-14 02:10:02,029] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-14 02:10:02,201] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-06-14 02:10:02,285] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-14 02:10:02,532] [pool-1-thread-3] Initializing 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02:10:12,212] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-14 02:10:12,260] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-14 02:10:12,645] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-14 02:10:12,998] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-14 02:10:13,265] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-14 02:10:13,471] [pool-1-thread-7] Initializing /data/samples/diatoms3d.stk: [testng] [2024-06-14 02:10:13,867] [pool-1-thread-7] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-14 02:10:14,361] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-14 02:10:14,434] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-14 02:10:15,050] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-14 02:10:16,878] [pool-1-thread-5] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-14 02:10:17,207] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-06-14 02:10:17,281] [pool-1-thread-6] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-14 02:10:18,221] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:18,329] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-06-14 02:10:18,758] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:19,247] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-14 02:10:19,727] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-06-14 02:10:19,775] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-06-14 02:10:20,339] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-14 02:10:21,547] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-14 02:10:22,014] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-06-14 02:10:22,943] [pool-1-thread-10] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-14 02:10:22,995] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-14 02:10:23,064] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-14 02:10:23,973] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] 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02:10:39,271] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif: [testng] [2024-06-14 02:10:39,371] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-14 02:10:39,432] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-14 02:10:39,449] [pool-1-thread-6] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-14 02:10:39,532] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-06-14 02:10:41,756] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-06-14 02:10:42,202] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-14 02:10:42,282] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-06-14 02:10:42,413] [pool-1-thread-6] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-06-14 02:10:42,985] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:43,397] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-14 02:10:43,978] [pool-1-thread-9] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-14 02:10:44,186] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-14 02:10:44,321] [pool-1-thread-3] Initializing /data/josh/2101to600e.stk: [testng] [2024-06-14 02:10:45,347] [pool-1-thread-9] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-06-14 02:10:45,411] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-06-14 02:10:45,753] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-14 02:10:46,096] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:46,523] [pool-1-thread-12] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-14 02:10:46,604] [pool-1-thread-9] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-14 02:10:46,676] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-14 02:10:46,715] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-14 02:10:47,350] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:47,422] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-14 02:10:47,703] [pool-1-thread-12] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-14 02:10:47,845] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-06-14 02:10:48,376] [pool-1-thread-9] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-14 02:10:48,469] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-14 02:10:48,483] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-14 02:10:48,770] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-06-14 02:10:48,830] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-14 02:10:49,096] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-06-14 02:10:49,138] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-14 02:10:49,139] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-14 02:10:49,397] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-14 02:10:49,465] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-14 02:10:49,608] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-14 02:10:49,974] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-14 02:10:50,143] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:50,297] [pool-1-thread-9] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-06-14 02:10:50,416] [pool-1-thread-12] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-14 02:10:50,778] [pool-1-thread-8] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-06-14 02:10:51,302] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-14 02:10:51,359] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-14 02:10:51,366] [pool-1-thread-12] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-14 02:10:51,514] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-14 02:10:51,578] [pool-1-thread-3] Initializing /data/samples/zser24.stk: [testng] [2024-06-14 02:10:51,824] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-14 02:10:52,045] [pool-1-thread-3] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-14 02:10:52,260] [pool-1-thread-11] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-14 02:10:52,351] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-14 02:10:52,644] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-14 02:10:52,680] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-14 02:10:53,365] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-06-14 02:10:53,424] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-06-14 02:10:53,642] [pool-1-thread-3] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-14 02:10:56,076] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-14 02:10:56,144] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-14 02:10:56,154] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-14 02:10:56,438] [pool-1-thread-5] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-14 02:10:56,489] [pool-1-thread-6] Initializing /data/grant/X.STK: [testng] [2024-06-14 02:10:56,738] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-14 02:10:57,168] [pool-1-thread-12] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-14 02:10:57,742] [pool-1-thread-5] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-14 02:10:59,163] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-14 02:10:59,763] [pool-1-thread-1] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-14 02:11:00,058] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-14 02:11:00,454] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-14 02:11:00,928] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-14 02:11:01,268] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-06-14 02:11:01,347] [pool-1-thread-12] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-14 02:11:01,460] [pool-1-thread-6] Initializing /data/thomas/test.tif: [testng] [2024-06-14 02:11:02,197] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-14 02:11:02,271] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-14 02:11:02,450] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-14 02:11:02,625] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-14 02:11:02,699] [pool-1-thread-1] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-14 02:11:02,805] [pool-1-thread-6] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-14 02:11:03,141] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 33 seconds Finished: SUCCESS