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Started by upstream project "BIOFORMATS-test-repo" build number 92 originally caused by: Started by upstream project "Trigger" build number 103 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9766445425251448349.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14194_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:21:21,136 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:21:21,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:21:21,138 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:21:21,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:21:21,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:21:21,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:21:21,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:21:21,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:21:21,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:21:21,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:21:21,140 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:21:21,141 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:21:21,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:21:21,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:21:21,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:21:21,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:21:21,415 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:21:21,416 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:21:21,416 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:21:21,416 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:21:21,416 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:21:21,417 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:21:21,417 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-14 02:21:21,428] [main] java.version = 1.8.0_342 [testng] 02:21:21,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:21:21,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:21,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_02-21-21.log] [testng] 02:21:21,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-14 02:21:21,481] [main] testng.directory = /data [testng] [2024-06-14 02:21:21,481] [main] testng.configDirectory = /config [testng] [2024-06-14 02:21:21,494] [main] testng.multiplier = 1.0 [testng] [2024-06-14 02:21:21,495] [main] testng.in-memory = false [testng] [2024-06-14 02:21:21,495] [main] testng.allow-missing = false [testng] [2024-06-14 02:21:21,495] [main] user.language = en [testng] [2024-06-14 02:21:21,495] [main] user.country = ${user.country} [testng] [2024-06-14 02:21:21,495] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-14 02:21:28,038] [main] ---------------------------------------- [testng] [2024-06-14 02:21:28,039] [main] Total files: 67 [testng] [2024-06-14 02:21:28,039] [main] Scan time: 6.543 s (97 ms/file) [testng] [2024-06-14 02:21:28,039] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-14 02:21:50,215] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 02:21:50,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:21:50,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_02-21-50.log] [testng] 02:21:50,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c00c28 - End of configuration. [testng] [2024-06-14 02:21:50,255] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims: [testng] 02:21:50,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:21:50,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_02-21-50.log] [testng] 02:21:50,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3436c468 - End of configuration. [testng] [2024-06-14 02:21:50,275] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:21:50,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:21:50,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_02-21-50.log] [testng] 02:21:50,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d92a29 - End of configuration. [testng] [2024-06-14 02:21:50,289] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims: [testng] 02:21:50,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:21:50,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_02-21-50.log] [testng] 02:21:50,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd56abb - End of configuration. [testng] [2024-06-14 02:21:50,301] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:21:50,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:21:50,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_02-21-50.log] [testng] 02:21:50,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5b469d - End of configuration. [testng] [2024-06-14 02:21:50,342] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: [testng] 02:21:50,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:21:50,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_02-21-50.log] [testng] 02:21:50,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b4ce3b0 - End of configuration. [testng] [2024-06-14 02:21:50,356] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims: [testng] 02:21:50,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:21:50,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_02-21-50.log] [testng] 02:21:50,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d9fc1d9 - End of configuration. [testng] [2024-06-14 02:21:50,370] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 02:21:50,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:21:50,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_02-21-50.log] [testng] 02:21:50,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a938f37 - End of configuration. [testng] [2024-06-14 02:21:50,391] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims: [testng] 02:21:50,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:21:50,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_02-21-50.log] [testng] 02:21:50,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a68847 - End of configuration. [testng] [2024-06-14 02:21:50,458] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:21:50,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:21:50,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_02-21-50.log] [testng] 02:21:50,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459d8a1a - End of configuration. [testng] [2024-06-14 02:21:50,483] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 02:21:50,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:21:50,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_02-21-50.log] [testng] 02:21:50,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479c1285 - End of configuration. [testng] [2024-06-14 02:21:50,517] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 02:21:50,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:21:50,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:50,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_02-21-50.log] [testng] 02:21:50,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c16df15 - End of configuration. [testng] [2024-06-14 02:21:52,551] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0012.ims: [testng] [2024-06-14 02:21:52,568] [pool-1-thread-7] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] [2024-06-14 02:21:52,667] [pool-1-thread-8] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims: [testng] [2024-06-14 02:21:52,723] [pool-1-thread-6] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] [2024-06-14 02:21:52,756] [pool-1-thread-10] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: [testng] [2024-06-14 02:21:52,782] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0010.ims: [testng] [2024-06-14 02:21:52,802] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0006.ims: [testng] [2024-06-14 02:21:53,586] [pool-1-thread-3] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-06-14 02:21:53,874] [pool-1-thread-12] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF_IMS3.ims: [testng] [2024-06-14 02:21:54,044] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0014.ims: [testng] [2024-06-14 02:21:54,301] [pool-1-thread-11] Initializing /data/qa-4898/o383_1_457_CS_r1.ims: BUILD SUCCESSFUL Total time: 1 minute 32 seconds Finished: SUCCESS