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Started by upstream project "BIOFORMATS-test-repo" build number 92 originally caused by: Started by upstream project "Trigger" build number 103 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14642594832780293683.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14210_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:35:32,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:35:32,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:35:32,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:35:32,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:35:32,170 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:35:32,171 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:35:32,171 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:35:32,174 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:35:32,175 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:35:32,177 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:35:32,177 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 471 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-14 02:35:32,197] [main] java.version = 1.8.0_342 [testng] 02:35:32,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:35:32,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:32,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_02-35-32.log] [testng] 02:35:32,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-14 02:35:32,284] [main] testng.directory = /data [testng] [2024-06-14 02:35:32,284] [main] testng.configDirectory = /config [testng] [2024-06-14 02:35:32,306] [main] testng.multiplier = 1.0 [testng] [2024-06-14 02:35:32,307] [main] testng.in-memory = false [testng] [2024-06-14 02:35:32,308] [main] testng.allow-missing = false [testng] [2024-06-14 02:35:32,308] [main] user.language = en [testng] [2024-06-14 02:35:32,308] [main] user.country = ${user.country} [testng] [2024-06-14 02:35:32,308] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-14 02:35:32,895] [main] ---------------------------------------- [testng] [2024-06-14 02:35:32,895] [main] Total files: 18 [testng] [2024-06-14 02:35:32,895] [main] Scan time: 0.587 s (32 ms/file) [testng] [2024-06-14 02:35:32,895] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-14 02:35:34,552] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] 02:35:34,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:35:34,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:34,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_02-35-34.log] [testng] 02:35:34,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b707c69 - End of configuration. [testng] [2024-06-14 02:35:34,591] [pool-1-thread-12] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:35:34,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:35:34,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:34,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_02-35-34.log] [testng] 02:35:34,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c43ef25 - End of configuration. [testng] [2024-06-14 02:35:34,607] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:35:34,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:35:34,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:34,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_02-35-34.log] [testng] 02:35:34,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5042688e - End of configuration. [testng] [2024-06-14 02:35:34,651] [pool-1-thread-10] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:35:34,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:35:34,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:34,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_02-35-34.log] [testng] 02:35:34,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd743fe - End of configuration. [testng] [2024-06-14 02:35:34,899] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:35:34,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:35:34,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:34,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_02-35-34.log] [testng] 02:35:34,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bfa90cb - End of configuration. [testng] [2024-06-14 02:35:34,923] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:35:34,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:35:34,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:34,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_02-35-34.log] [testng] 02:35:34,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e626b12 - End of configuration. [testng] [2024-06-14 02:35:35,100] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd: [testng] 02:35:35,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:35:35,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:35,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_02-35-35.log] [testng] 02:35:35,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3614ea80 - End of configuration. [testng] [2024-06-14 02:35:35,172] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:35:35,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:35:35,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:35,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_02-35-35.log] [testng] 02:35:35,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7f6357 - End of configuration. [testng] [2024-06-14 02:35:35,287] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] 02:35:35,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:35:35,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:35,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_02-35-35.log] [testng] 02:35:35,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ff27530 - End of configuration. [testng] [2024-06-14 02:35:35,341] [pool-1-thread-4] Initializing /data/misc/smilie.psd: [testng] 02:35:35,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:35:35,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:35,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_02-35-35.log] [testng] 02:35:35,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fa4eac - End of configuration. [testng] [2024-06-14 02:35:35,384] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 02:35:35,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:35:35,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:35,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_02-35-35.log] [testng] 02:35:35,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128cb676 - End of configuration. [testng] [2024-06-14 02:35:35,502] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd: [testng] 02:35:35,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:35:35,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:35,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_02-35-35.log] [testng] 02:35:35,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77da2ad8 - End of configuration. [testng] [2024-06-14 02:35:39,154] [pool-1-thread-5] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-06-14 02:35:39,182] [pool-1-thread-9] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-06-14 02:35:39,252] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-06-14 02:35:39,405] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] [2024-06-14 02:35:39,495] [pool-1-thread-12] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-06-14 02:35:39,540] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 seconds Finished: SUCCESS