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Started by upstream project "BIOFORMATS-test-repo" build number 93 originally caused by: Started by upstream project "Trigger" build number 104 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17783381106180446211.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14326_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:57:01,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:57:01,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:57:01,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:01,511 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:01,512 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:57:01,512 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:57:01,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:57:01,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:01,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:01,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:57:01,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:57:01,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:57:01,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:57:01,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:57:01,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:57:01,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:57:01,763 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:57:01,763 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:57:01,764 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:57:01,764 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:57:01,765 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:57:01,766 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:57:01,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-15 01:57:01,785] [main] java.version = 11.0.16 [testng] 01:57:01,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:57:01,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:01,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-15_01-57-01.log] [testng] 01:57:01,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-15 01:57:01,888] [main] testng.directory = /data [testng] [2024-06-15 01:57:01,889] [main] testng.configDirectory = /config [testng] [2024-06-15 01:57:01,901] [main] testng.multiplier = 1.0 [testng] [2024-06-15 01:57:01,902] [main] testng.in-memory = false [testng] [2024-06-15 01:57:01,903] [main] testng.allow-missing = false [testng] [2024-06-15 01:57:01,903] [main] user.language = en [testng] [2024-06-15 01:57:01,903] [main] user.country = ${user.country} [testng] [2024-06-15 01:57:01,903] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-15 02:03:54,742] [main] ---------------------------------------- [testng] [2024-06-15 02:03:54,742] [main] Total files: 7329 [testng] [2024-06-15 02:03:54,742] [main] Scan time: 412.839 s (56 ms/file) [testng] [2024-06-15 02:03:54,742] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-15 02:06:50,258] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:06:50,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:50,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:50,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-15_02-06-50.log] [testng] 02:06:50,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6b1a13 - End of configuration. [testng] [2024-06-15 02:06:50,346] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-15 02:06:50,351] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:06:50,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:50,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:50,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-15_02-06-50.log] [testng] 02:06:50,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3062761a - End of configuration. [testng] [2024-06-15 02:06:50,949] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:06:50,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:50,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:50,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-15_02-06-50.log] [testng] 02:06:50,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a05bd2e - End of configuration. [testng] [2024-06-15 02:06:51,032] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:06:51,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:51,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-15_02-06-51.log] [testng] 02:06:51,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b11c39 - End of configuration. [testng] [2024-06-15 02:06:51,154] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:06:51,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:51,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-15_02-06-51.log] [testng] 02:06:51,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21204f43 - End of configuration. [testng] [2024-06-15 02:06:51,220] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-15 02:06:51,222] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:06:51,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:51,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-15_02-06-51.log] [testng] 02:06:51,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@619f1dc4 - End of configuration. [testng] [2024-06-15 02:06:51,373] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:06:51,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:51,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-15_02-06-51.log] [testng] 02:06:51,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f13b34d - End of configuration. [testng] [2024-06-15 02:06:51,412] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:06:51,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:51,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-15_02-06-51.log] [testng] 02:06:51,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53f4a0f0 - End of configuration. [testng] [2024-06-15 02:06:51,513] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:06:51,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:51,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-15_02-06-51.log] [testng] 02:06:51,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d3cc1c - End of configuration. [testng] [2024-06-15 02:06:51,585] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-15 02:06:51,587] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:06:51,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:51,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-15_02-06-51.log] [testng] 02:06:51,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16673ce - End of configuration. [testng] [2024-06-15 02:06:51,724] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:06:51,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:51,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-15_02-06-51.log] [testng] 02:06:51,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@608dbb33 - End of configuration. [testng] [2024-06-15 02:06:51,797] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:06:51,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:51,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:51,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-15_02-06-51.log] [testng] 02:06:51,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55f13c7d - End of configuration. [testng] [2024-06-15 02:06:53,529] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-15 02:06:53,849] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-15 02:06:54,004] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-15 02:06:54,216] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-15 02:06:54,398] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-15 02:06:54,769] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-15 02:06:55,249] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-15 02:06:55,332] [pool-1-thread-7] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-15 02:06:56,331] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-15 02:06:57,298] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-15 02:06:57,509] [pool-1-thread-5] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-15 02:06:57,584] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-15 02:06:57,972] [pool-1-thread-3] Initializing /data/samples/zseries.stk: [testng] [2024-06-15 02:06:58,367] [pool-1-thread-7] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-15 02:06:58,596] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-15 02:06:58,624] [pool-1-thread-4] Used files list does not include base file [testng] [2024-06-15 02:06:58,770] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-15 02:06:58,868] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-15 02:06:58,929] [pool-1-thread-12] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-15 02:07:00,272] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-15 02:07:00,336] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-15 02:07:00,590] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-15 02:07:00,851] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-15 02:07:00,861] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-15 02:07:01,084] [pool-1-thread-4] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-15 02:07:03,438] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-15 02:07:03,527] [pool-1-thread-9] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-15 02:07:03,600] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-15 02:07:03,693] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-06-15 02:07:05,185] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-15 02:07:05,314] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-15 02:07:05,378] [pool-1-thread-11] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-15 02:07:05,599] [pool-1-thread-10] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-15 02:07:06,257] [pool-1-thread-6] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] 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[pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-15 02:07:17,415] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-15 02:07:19,704] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-15 02:07:19,750] [pool-1-thread-3] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-15 02:07:21,226] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-15 02:07:21,275] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-15 02:07:21,334] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-15 02:07:22,014] [pool-1-thread-4] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-15 02:07:22,706] [pool-1-thread-12] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-15 02:07:22,904] 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02:07:26,394] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-15 02:07:26,511] [pool-1-thread-4] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-15 02:07:26,993] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-15 02:07:27,474] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-15 02:07:27,925] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-15 02:07:28,241] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-15 02:07:28,279] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-15 02:07:28,629] [pool-1-thread-11] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-15 02:07:28,754] [pool-1-thread-10] Initializing 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02:07:40,188] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-15 02:07:40,224] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-15 02:07:40,880] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-15 02:07:41,308] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-15 02:07:41,530] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-15 02:07:41,672] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-15 02:07:42,332] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-15 02:07:42,600] [pool-1-thread-2] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-15 02:07:43,032] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-15 02:07:43,127] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-15 02:07:43,671] [pool-1-thread-4] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-15 02:07:43,801] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-15 02:07:43,987] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-15 02:07:44,130] [pool-1-thread-10] Initializing /data/jerome/deconv.STK: [testng] [2024-06-15 02:07:44,285] [pool-1-thread-6] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-15 02:07:45,109] [pool-1-thread-10] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-15 02:07:45,185] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-15 02:07:48,698] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-15 02:07:49,526] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-06-15 02:07:49,643] [pool-1-thread-6] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-15 02:07:49,992] [pool-1-thread-3] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-15 02:07:50,858] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-15 02:07:51,020] [pool-1-thread-6] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-06-15 02:07:51,555] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-15 02:07:51,606] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-15 02:07:51,607] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-15 02:07:53,279] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-06-15 02:07:53,513] [pool-1-thread-12] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-15 02:07:54,111] [pool-1-thread-8] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-15 02:07:54,369] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-15 02:07:55,285] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-15 02:07:55,785] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-15 02:07:56,254] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-15 02:07:57,843] [pool-1-thread-11] Initializing 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02:08:01,114] [pool-1-thread-8] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-15 02:08:01,717] [pool-1-thread-11] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-15 02:08:02,180] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-15 02:08:02,394] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-15 02:08:02,663] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-15 02:08:02,980] [pool-1-thread-8] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-15 02:08:03,479] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-15 02:08:03,534] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-15 02:08:03,615] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-15 02:08:03,719] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-15 02:08:03,740] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-15 02:08:03,917] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-15 02:08:04,210] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-15 02:08:04,397] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-15 02:08:04,706] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-15 02:08:05,212] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-15 02:08:05,543] [pool-1-thread-12] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-15 02:08:12,224] [pool-1-thread-4] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-15 02:08:12,293] [pool-1-thread-8] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-15 02:08:13,264] [pool-1-thread-3] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-15 02:08:13,391] [pool-1-thread-6] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-15 02:08:13,690] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-15 02:08:13,745] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-15 02:08:14,203] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-15 02:08:15,032] [pool-1-thread-3] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-15 02:08:15,251] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-15 02:08:15,804] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-15 02:08:16,654] [pool-1-thread-3] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-15 02:08:18,392] [pool-1-thread-11] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-15 02:08:18,525] [pool-1-thread-8] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-15 02:08:18,779] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-15 02:08:18,971] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-15 02:08:19,277] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-15 02:08:19,639] [pool-1-thread-11] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-15 02:08:20,600] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-15 02:08:20,906] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-15 02:08:20,961] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-15 02:08:21,170] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-15 02:08:21,497] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-15 02:08:21,873] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-15 02:08:21,922] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-15 02:08:22,787] [pool-1-thread-2] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-15 02:08:24,069] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-15 02:08:24,131] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-15 02:08:24,400] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-15 02:08:24,486] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-15 02:08:24,603] [pool-1-thread-3] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-15 02:08:24,651] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-15 02:08:25,417] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-15 02:08:25,777] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-15 02:08:25,933] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-15 02:08:26,279] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-15 02:08:26,993] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-15 02:08:27,507] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-15 02:08:27,957] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-15 02:08:28,008] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-15 02:08:28,144] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-15 02:08:28,717] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-15 02:08:30,058] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-15 02:08:30,171] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-15 02:08:30,385] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-15 02:08:30,727] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-15 02:08:30,827] [pool-1-thread-1] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 29 seconds Finished: SUCCESS