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Started by upstream project "BIOFORMATS-test-repo" build number 95 originally caused by: Started by upstream project "Trigger" build number 106 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8398541292069221691.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_14594_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:35,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:25:35,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:25:35,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:35,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:35,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:25:35,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:25:35,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:25:35,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:35,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:35,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:25:35,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:25:35,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:25:36,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:36,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:36,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:36,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:36,257 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:36,257 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:36,257 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:36,258 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:36,258 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:25:36,259 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:25:36,259 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 300 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-17 01:25:36,271] [main] java.version = 1.8.0_342 [testng] 01:25:36,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:36,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_01-25-36.log] [testng] 01:25:36,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-17 01:25:36,338] [main] testng.directory = /data [testng] [2024-06-17 01:25:36,338] [main] testng.configDirectory = /config [testng] [2024-06-17 01:25:36,355] [main] testng.multiplier = 1.0 [testng] [2024-06-17 01:25:36,355] [main] testng.in-memory = false [testng] [2024-06-17 01:25:36,355] [main] testng.allow-missing = false [testng] [2024-06-17 01:25:36,355] [main] user.language = fr [testng] [2024-06-17 01:25:36,355] [main] user.country = FR [testng] [2024-06-17 01:25:36,355] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-17 01:25:37,006] [main] ---------------------------------------- [testng] [2024-06-17 01:25:37,006] [main] Total files: 31 [testng] [2024-06-17 01:25:37,006] [main] Scan time: 0.65 s (20 ms/file) [testng] [2024-06-17 01:25:37,006] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-17 01:25:40,170] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:25:40,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:40,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_01-25-40.log] [testng] 01:25:40,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e04baf1 - End of configuration. [testng] [2024-06-17 01:25:40,199] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:25:40,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:40,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_01-25-40.log] [testng] 01:25:40,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@306bca0a - End of configuration. [testng] [2024-06-17 01:25:40,214] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:25:40,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:40,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_01-25-40.log] [testng] 01:25:40,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@743461f4 - End of configuration. [testng] [2024-06-17 01:25:40,222] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:25:40,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:40,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_01-25-40.log] [testng] 01:25:40,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e58bd0b - End of configuration. [testng] [2024-06-17 01:25:40,236] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:25:40,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:40,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_01-25-40.log] [testng] 01:25:40,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c1c5d97 - End of configuration. [testng] [2024-06-17 01:25:40,295] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:25:40,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:40,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_01-25-40.log] [testng] 01:25:40,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28541b46 - End of configuration. [testng] [2024-06-17 01:25:40,304] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:25:40,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:40,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_01-25-40.log] [testng] 01:25:40,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b9fc782 - End of configuration. [testng] [2024-06-17 01:25:40,323] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:25:40,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:40,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_01-25-40.log] [testng] 01:25:40,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37447c4b - End of configuration. [testng] [2024-06-17 01:25:40,335] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:25:40,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:40,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_01-25-40.log] [testng] 01:25:40,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6778099d - End of configuration. [testng] [2024-06-17 01:25:40,351] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:25:40,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:40,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_01-25-40.log] [testng] 01:25:40,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@106c6a8a - End of configuration. [testng] [2024-06-17 01:25:40,364] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:25:40,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:40,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_01-25-40.log] [testng] 01:25:40,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c40181f - End of configuration. [testng] [2024-06-17 01:25:40,372] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:25:40,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:40,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_01-25-40.log] [testng] 01:25:40,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f80843a - End of configuration. [testng] [2024-06-17 01:25:42,552] [pool-1-thread-10] Initializing /data/curtis/image1.bmp: [testng] [2024-06-17 01:25:42,557] [pool-1-thread-11] Initializing /data/stephane/holo0908.bmp: [testng] [2024-06-17 01:25:42,565] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-06-17 01:25:42,573] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-06-17 01:25:42,580] [pool-1-thread-8] Initializing /data/curtis/image2.bmp: [testng] [2024-06-17 01:25:42,591] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-06-17 01:25:42,600] [pool-1-thread-6] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-06-17 01:25:42,608] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-06-17 01:25:42,615] [pool-1-thread-1] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-06-17 01:25:43,205] [pool-1-thread-8] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-06-17 01:25:43,338] [pool-1-thread-10] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-06-17 01:25:43,725] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-06-17 01:25:43,734] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-06-17 01:25:43,846] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-06-17 01:25:43,856] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-06-17 01:25:43,862] [pool-1-thread-7] Initializing /data/curtis/image4.bmp: [testng] [2024-06-17 01:25:44,074] [pool-1-thread-1] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-06-17 01:25:44,084] [pool-1-thread-10] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [2024-06-17 01:25:44,093] [pool-1-thread-7] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS