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Started by upstream project "BIOFORMATS-test-repo" build number 10 originally caused by: Started by upstream project "Trigger" build number 13 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7079828903301975886.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1462_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:20:58,891 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:20:58,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 00:20:58,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:58,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:58,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:20:58,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:20:58,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:20:58,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:58,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:58,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:20:58,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:20:58,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:20:59,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:20:59,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:20:59,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:20:59,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:20:59,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:20:59,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:20:59,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:20:59,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:20:59,123 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 00:20:59,124 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 00:20:59,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 228 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-24 00:20:59,133] [main] java.version = 17.0.2 [testng] 00:20:59,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:20:59,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:59,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-24_00-20-59.log] [testng] 00:20:59,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-24 00:20:59,183] [main] testng.directory = /data [testng] [2024-03-24 00:20:59,183] [main] testng.configDirectory = /config [testng] [2024-03-24 00:20:59,192] [main] testng.multiplier = 1.0 [testng] [2024-03-24 00:20:59,193] [main] testng.in-memory = false [testng] [2024-03-24 00:20:59,193] [main] testng.allow-missing = false [testng] [2024-03-24 00:20:59,193] [main] user.language = en [testng] [2024-03-24 00:20:59,193] [main] user.country = ${user.country} [testng] [2024-03-24 00:20:59,193] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-24 00:21:08,659] [main] ---------------------------------------- [testng] [2024-03-24 00:21:08,660] [main] Total files: 21 [testng] [2024-03-24 00:21:08,660] [main] Scan time: 9.466 s (450 ms/file) [testng] [2024-03-24 00:21:08,660] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-24 00:21:23,130] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt: [testng] 00:21:23,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:23,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:23,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-24_00-21-23.log] [testng] 00:21:23,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308beec1 - End of configuration. [testng] [2024-03-24 00:21:23,717] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 00:21:23,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:23,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:23,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-24_00-21-23.log] [testng] 00:21:23,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65d78d88 - End of configuration. [testng] [2024-03-24 00:21:24,127] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: [testng] 00:21:24,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:24,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:24,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-24_00-21-24.log] [testng] 00:21:24,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a3788d6 - End of configuration. [testng] [2024-03-24 00:21:24,509] [pool-1-thread-10] Initializing /data/stefan/001_q18.txt: [testng] 00:21:24,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:24,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:24,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-24_00-21-24.log] [testng] 00:21:24,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75aec3ce - End of configuration. [testng] [2024-03-24 00:21:24,965] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt: [testng] 00:21:24,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:24,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:24,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-24_00-21-24.log] [testng] 00:21:24,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bfa346 - End of configuration. [testng] [2024-03-24 00:21:25,654] [pool-1-thread-8] Initializing /data/stefan/001_q10.txt: [testng] 00:21:25,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:25,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:25,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-24_00-21-25.log] [testng] 00:21:25,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@520c5445 - End of configuration. [testng] [2024-03-24 00:21:26,375] [pool-1-thread-7] Initializing /data/stefan/001_q04.txt: [testng] 00:21:26,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:26,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:26,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-24_00-21-26.log] [testng] 00:21:26,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522ef87 - End of configuration. [testng] [2024-03-24 00:21:26,888] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt: [testng] 00:21:26,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:26,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:26,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-24_00-21-26.log] [testng] 00:21:26,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2765e0c - End of configuration. [testng] [2024-03-24 00:21:27,311] [pool-1-thread-5] Initializing /data/stefan/001_q01.txt: [testng] 00:21:27,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:27,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:27,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-24_00-21-27.log] [testng] 00:21:27,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9007bfc - End of configuration. [testng] [2024-03-24 00:21:27,830] [pool-1-thread-4] Initializing /data/stefan/001_q12.txt: [testng] 00:21:27,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:27,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:27,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-24_00-21-27.log] [testng] 00:21:27,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59ef3dec - End of configuration. [testng] [2024-03-24 00:21:29,258] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt: [testng] 00:21:29,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:29,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:29,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-24_00-21-29.log] [testng] 00:21:29,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f18a2ab - End of configuration. [testng] [2024-03-24 00:21:29,936] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt: [testng] 00:21:29,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:29,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:29,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-24_00-21-29.log] [testng] 00:21:29,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc176a5 - End of configuration. [testng] [2024-03-24 00:21:38,486] [pool-1-thread-11] Initializing /data/stefan/001_q07.txt: [testng] [2024-03-24 00:21:39,114] [pool-1-thread-7] Initializing /data/stefan/001_q17.txt: [testng] [2024-03-24 00:21:39,592] [pool-1-thread-2] Initializing /data/stefan/001_q16.txt: [testng] [2024-03-24 00:21:40,025] [pool-1-thread-5] Initializing /data/stefan/001_q09.txt: [testng] [2024-03-24 00:21:40,720] [pool-1-thread-12] Initializing /data/stefan/001_q08.txt: [testng] [2024-03-24 00:21:41,404] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 54 seconds Finished: SUCCESS