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Started by upstream project "BIOFORMATS-test-repo" build number 95 originally caused by: Started by upstream project "Trigger" build number 106 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins18085663777851505418.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_14655_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:02:51,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:51,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:51,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:51,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:51,796 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:51,796 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:51,796 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:51,797 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:51,797 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:02:51,799 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:02:51,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 701 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-17 02:02:51,846] [main] java.version = 1.8.0_342 [testng] 02:02:51,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:51,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:51,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_02-02-51.log] [testng] 02:02:51,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-17 02:02:51,934] [main] testng.directory = /data [testng] [2024-06-17 02:02:51,935] [main] testng.configDirectory = /config [testng] [2024-06-17 02:02:52,041] [main] testng.multiplier = 1.0 [testng] [2024-06-17 02:02:52,041] [main] testng.in-memory = false [testng] [2024-06-17 02:02:52,041] [main] testng.allow-missing = false [testng] [2024-06-17 02:02:52,041] [main] user.language = fr [testng] [2024-06-17 02:02:52,042] [main] user.country = FR [testng] [2024-06-17 02:02:52,042] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-17 02:02:53,723] [main] ---------------------------------------- [testng] [2024-06-17 02:02:53,723] [main] Total files: 40 [testng] [2024-06-17 02:02:53,723] [main] Scan time: 1.681 s (42 ms/file) [testng] [2024-06-17 02:02:53,723] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-17 02:06:47,610] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] 02:06:47,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:47,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_02-06-47.log] [testng] 02:06:47,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557b262 - End of configuration. [testng] [2024-06-17 02:06:47,655] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 02:06:47,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:47,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_02-06-47.log] [testng] 02:06:47,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d6e8078 - End of configuration. [testng] [2024-06-17 02:06:47,683] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:06:47,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:47,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_02-06-47.log] [testng] 02:06:47,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e580785 - End of configuration. [testng] [2024-06-17 02:06:47,715] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:06:47,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:47,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_02-06-47.log] [testng] 02:06:47,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f78e5a7 - End of configuration. [testng] [2024-06-17 02:06:47,750] [pool-1-thread-9] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:06:47,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:47,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_02-06-47.log] [testng] 02:06:47,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19feecb - End of configuration. [testng] [2024-06-17 02:06:47,763] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:06:47,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:47,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_02-06-47.log] [testng] 02:06:47,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf41a82 - End of configuration. [testng] [2024-06-17 02:06:47,852] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] 02:06:47,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:47,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_02-06-47.log] [testng] 02:06:47,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c78fa2 - End of configuration. [testng] [2024-06-17 02:06:47,881] [pool-1-thread-6] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:06:47,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:47,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_02-06-47.log] [testng] 02:06:47,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bebb8ed - End of configuration. [testng] [2024-06-17 02:06:47,939] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] 02:06:47,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:47,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_02-06-47.log] [testng] 02:06:47,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7283b766 - End of configuration. [testng] [2024-06-17 02:06:47,962] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:06:47,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:47,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_02-06-47.log] [testng] 02:06:47,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fdd6a9c - End of configuration. [testng] [2024-06-17 02:06:47,994] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 02:06:47,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:47,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_02-06-47.log] [testng] 02:06:47,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c78454 - End of configuration. [testng] [2024-06-17 02:07:18,505] [pool-1-thread-2] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:07:18,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:18,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:18,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_02-07-18.log] [testng] 02:07:18,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f62c59 - End of configuration. [testng] [2024-06-17 02:07:20,641] [pool-1-thread-2] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-06-17 02:07:20,658] [pool-1-thread-7] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-06-17 02:07:20,674] [pool-1-thread-10] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-06-17 02:07:21,442] [pool-1-thread-9] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-06-17 02:07:21,478] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-06-17 02:07:21,503] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-06-17 02:07:21,518] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: [testng] [2024-06-17 02:07:21,586] [pool-1-thread-4] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-06-17 02:07:21,647] [pool-1-thread-11] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-06-17 02:07:21,712] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-06-17 02:07:22,122] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-06-17 02:07:22,191] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-06-17 02:07:22,454] [pool-1-thread-6] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-06-17 02:07:22,546] [pool-1-thread-2] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-06-17 02:07:22,651] [pool-1-thread-5] Initializing /data/chris/APZ04_009.avi: [testng] [2024-06-17 02:07:28,871] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-06-17 02:07:29,057] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-06-17 02:07:29,219] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-06-17 02:07:29,557] [pool-1-thread-12] Initializing /data/kurt/63x_6um.avi: [testng] [2024-06-17 02:07:29,647] [pool-1-thread-4] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-06-17 02:07:29,704] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-06-17 02:07:29,912] [pool-1-thread-8] Initializing /data/ascb/TIRF.avi: [testng] [2024-06-17 02:07:30,251] [pool-1-thread-11] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-06-17 02:07:30,614] [pool-1-thread-1] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-06-17 02:07:30,956] [pool-1-thread-10] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-06-17 02:07:31,052] [pool-1-thread-2] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 51 seconds Finished: SUCCESS