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Started by upstream project "BIOFORMATS-test-repo" build number 96 originally caused by: Started by upstream project "Trigger" build number 107 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15019547395434545407.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14891_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:46:46,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:46:46,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:46:46,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:46:46,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:46:46,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:46:46,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:46:46,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:46:46,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:46:46,605 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:46:46,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:46:46,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:46:46,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:46:46,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:46:46,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:46:46,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:46:46,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:46:46,806 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:46:46,806 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:46:46,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:46:46,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:46:46,807 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:46:46,808 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:46:46,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-18 02:46:46,818] [main] java.version = 11.0.16 [testng] 02:46:46,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:46:46,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:46,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-18_02-46-46.log] [testng] 02:46:46,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-18 02:46:46,869] [main] testng.directory = /data [testng] [2024-06-18 02:46:46,869] [main] testng.configDirectory = /config [testng] [2024-06-18 02:46:46,880] [main] testng.multiplier = 1.0 [testng] [2024-06-18 02:46:46,881] [main] testng.in-memory = false [testng] [2024-06-18 02:46:46,881] [main] testng.allow-missing = false [testng] [2024-06-18 02:46:46,881] [main] user.language = en [testng] [2024-06-18 02:46:46,881] [main] user.country = ${user.country} [testng] [2024-06-18 02:46:46,881] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-18 02:46:47,889] [main] ---------------------------------------- [testng] [2024-06-18 02:46:47,889] [main] Total files: 22 [testng] [2024-06-18 02:46:47,889] [main] Scan time: 1.007 s (45 ms/file) [testng] [2024-06-18 02:46:47,889] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-18 02:46:54,520] [pool-1-thread-1] Initializing /data/xiuwen/head2.seq: [testng] 02:46:54,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:46:54,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-18_02-46-54.log] [testng] 02:46:54,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f9b427c - End of configuration. [testng] [2024-06-18 02:46:54,642] [pool-1-thread-12] Initializing /data/converted/dub01.pic: [testng] 02:46:54,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:46:54,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-18_02-46-54.log] [testng] 02:46:54,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22bea41 - End of configuration. [testng] [2024-06-18 02:46:54,704] [pool-1-thread-11] Initializing /data/converted/clown.tif: [testng] 02:46:54,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:46:54,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-18_02-46-54.log] [testng] 02:46:54,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d72df82 - End of configuration. [testng] [2024-06-18 02:46:54,733] [pool-1-thread-10] Initializing /data/samples/PROBE.TIF: [testng] 02:46:54,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:46:54,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-18_02-46-54.log] [testng] 02:46:54,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b334369 - End of configuration. [testng] [2024-06-18 02:46:54,757] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw: [testng] 02:46:54,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:46:54,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-18_02-46-54.log] [testng] 02:46:54,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f7d19fb - End of configuration. [testng] [2024-06-18 02:46:54,815] [pool-1-thread-8] Initializing /data/converted/clown8c.tif: [testng] 02:46:54,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:46:54,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-18_02-46-54.log] [testng] 02:46:54,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a30a3b6 - End of configuration. [testng] [2024-06-18 02:46:54,848] [pool-1-thread-7] Initializing /data/converted/mitosis-test.tif: [testng] 02:46:54,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:46:54,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:54,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-18_02-46-54.log] [testng] 02:46:54,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd80ae9 - End of configuration. [testng] [2024-06-18 02:46:55,017] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips: [testng] 02:46:55,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:46:55,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:55,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-18_02-46-55.log] [testng] 02:46:55,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45749ad8 - End of configuration. [testng] [2024-06-18 02:46:55,031] [pool-1-thread-5] Initializing /data/converted/dub01.ipw: [testng] 02:46:55,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:46:55,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:55,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-18_02-46-55.log] [testng] 02:46:55,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2413bd1c - End of configuration. [testng] [2024-06-18 02:46:55,071] [pool-1-thread-4] Initializing /data/converted/clown.seq: [testng] 02:46:55,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:46:55,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:55,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-18_02-46-55.log] [testng] 02:46:55,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38404d94 - End of configuration. [testng] [2024-06-18 02:46:55,090] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:46:55,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:46:55,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:55,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-18_02-46-55.log] [testng] 02:46:55,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2cf2b4 - End of configuration. [testng] [2024-06-18 02:46:55,141] [pool-1-thread-2] Initializing /data/converted/clown.ipw: [testng] 02:46:55,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:46:55,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:55,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-18_02-46-55.log] [testng] 02:46:55,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b923de7 - End of configuration. [testng] [2024-06-18 02:46:57,055] [pool-1-thread-12] Initializing /data/converted/mitosis-test.seq: [testng] [2024-06-18 02:46:57,089] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-06-18 02:46:57,155] [pool-1-thread-10] Initializing /data/samples/HEART.SEQ: [testng] [2024-06-18 02:46:57,180] [pool-1-thread-8] Initializing /data/converted/clown8c.seq: [testng] [2024-06-18 02:46:57,196] [pool-1-thread-4] Initializing /data/converted/dub01.seq: [testng] [2024-06-18 02:46:57,217] [pool-1-thread-11] Initializing /data/converted/clown8c.ipw: [testng] [2024-06-18 02:46:57,228] [pool-1-thread-9] Initializing /data/samples/TISSUE.TIF: [testng] [2024-06-18 02:46:57,253] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2024-06-18 02:46:57,340] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS