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Started by upstream project "BIOFORMATS-test-repo" build number 97 originally caused by: Started by upstream project "Trigger" build number 108 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15330639028868843869.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14986_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:05:21,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:05:21,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:05:21,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:05:21,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:05:21,171 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:05:21,171 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:05:21,171 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:05:21,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:05:21,172 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:05:21,173 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:05:21,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 514 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-19 02:05:21,183] [main] java.version = 17.0.2 [testng] 02:05:21,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:05:21,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:21,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-19_02-05-21.log] [testng] 02:05:21,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-19 02:05:21,360] [main] testng.directory = /data [testng] [2024-06-19 02:05:21,360] [main] testng.configDirectory = /config [testng] [2024-06-19 02:05:21,473] [main] testng.multiplier = 1.0 [testng] [2024-06-19 02:05:21,474] [main] testng.in-memory = false [testng] [2024-06-19 02:05:21,474] [main] testng.allow-missing = false [testng] [2024-06-19 02:05:21,474] [main] user.language = en [testng] [2024-06-19 02:05:21,474] [main] user.country = ${user.country} [testng] [2024-06-19 02:05:21,474] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-19 02:05:31,720] [main] ---------------------------------------- [testng] [2024-06-19 02:05:31,720] [main] Total files: 268 [testng] [2024-06-19 02:05:31,720] [main] Scan time: 10.246 s (38 ms/file) [testng] [2024-06-19 02:05:31,720] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-19 02:05:41,480] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] 02:05:41,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:41,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-19_02-05-41.log] [testng] 02:05:41,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@469c8046 - End of configuration. [testng] [2024-06-19 02:05:41,527] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:05:41,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:41,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-19_02-05-41.log] [testng] 02:05:41,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335a23a4 - End of configuration. [testng] [2024-06-19 02:05:41,546] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 02:05:41,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:41,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-19_02-05-41.log] [testng] 02:05:41,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146ed280 - End of configuration. [testng] [2024-06-19 02:05:41,566] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] 02:05:41,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:41,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-19_02-05-41.log] [testng] 02:05:41,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f7cb769 - End of configuration. [testng] [2024-06-19 02:05:41,596] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] 02:05:41,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:41,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-19_02-05-41.log] [testng] 02:05:41,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704c3f72 - End of configuration. [testng] [2024-06-19 02:05:41,612] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 02:05:41,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:41,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-19_02-05-41.log] [testng] 02:05:41,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6476e730 - End of configuration. [testng] [2024-06-19 02:05:41,626] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA: [testng] 02:05:41,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:41,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-19_02-05-41.log] [testng] 02:05:41,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e18eba - End of configuration. [testng] [2024-06-19 02:05:41,647] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] 02:05:41,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:41,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-19_02-05-41.log] [testng] 02:05:41,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1be02b12 - End of configuration. [testng] [2024-06-19 02:05:41,663] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] 02:05:41,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:41,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-19_02-05-41.log] [testng] 02:05:41,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ced02b5 - End of configuration. [testng] [2024-06-19 02:05:41,816] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] 02:05:41,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:41,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-19_02-05-41.log] [testng] 02:05:41,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@461d68d6 - End of configuration. [testng] [2024-06-19 02:05:41,833] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 02:05:41,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:41,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-19_02-05-41.log] [testng] 02:05:41,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b38072f - End of configuration. [testng] [2024-06-19 02:05:41,855] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:05:41,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:41,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:41,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-19_02-05-41.log] [testng] 02:05:41,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6953eb0c - End of configuration. [testng] [2024-06-19 02:05:43,625] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-06-19 02:05:43,650] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-06-19 02:05:43,659] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-06-19 02:05:43,682] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-06-19 02:05:43,709] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-06-19 02:05:43,717] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-06-19 02:05:43,727] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-06-19 02:05:43,761] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-06-19 02:05:44,164] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-06-19 02:05:44,212] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-06-19 02:05:44,242] [pool-1-thread-3] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-06-19 02:05:44,312] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-06-19 02:05:44,419] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-06-19 02:05:44,470] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-06-19 02:05:44,511] [pool-1-thread-1] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-06-19 02:05:44,650] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-06-19 02:05:44,714] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-06-19 02:05:44,742] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-06-19 02:05:44,784] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-06-19 02:05:44,875] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-06-19 02:05:45,041] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-06-19 02:05:45,205] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-06-19 02:05:45,219] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-06-19 02:05:45,244] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-06-19 02:05:45,354] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-06-19 02:05:45,398] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-06-19 02:05:45,450] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-06-19 02:05:45,468] [pool-1-thread-12] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-06-19 02:05:45,511] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-06-19 02:05:45,572] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-06-19 02:05:45,614] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-06-19 02:05:45,730] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-06-19 02:05:45,767] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-06-19 02:05:45,787] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-06-19 02:05:45,795] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-06-19 02:05:45,811] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-06-19 02:05:45,823] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-06-19 02:05:46,029] [pool-1-thread-10] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-06-19 02:05:46,065] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-06-19 02:05:46,155] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-06-19 02:05:46,191] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-06-19 02:05:46,211] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-06-19 02:05:46,226] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-06-19 02:05:46,234] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-06-19 02:05:46,362] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-06-19 02:05:46,369] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-06-19 02:05:46,396] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-06-19 02:05:46,484] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-06-19 02:05:46,521] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-06-19 02:05:46,596] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-06-19 02:05:46,644] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-06-19 02:05:46,664] [pool-1-thread-5] Initializing /data/steve/FITS/M13.fits: [testng] [2024-06-19 02:05:46,750] [pool-1-thread-2] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-06-19 02:05:46,781] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-06-19 02:05:46,797] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-06-19 02:05:46,842] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-06-19 02:05:46,869] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-06-19 02:05:46,931] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-06-19 02:05:46,973] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-06-19 02:05:47,100] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-06-19 02:05:47,118] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-06-19 02:05:47,158] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-06-19 02:05:47,182] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-06-19 02:05:47,273] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-06-19 02:05:47,298] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-06-19 02:05:47,386] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-06-19 02:05:47,430] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-06-19 02:05:47,650] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-06-19 02:05:47,662] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-06-19 02:05:47,668] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-06-19 02:05:47,677] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-06-19 02:05:47,772] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-06-19 02:05:47,825] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-06-19 02:05:47,954] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-06-19 02:05:47,967] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-06-19 02:05:47,983] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-06-19 02:05:48,007] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-06-19 02:05:48,043] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-06-19 02:05:48,077] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-06-19 02:05:48,165] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-06-19 02:05:48,180] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-06-19 02:05:48,239] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-06-19 02:05:48,417] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-06-19 02:05:48,500] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-06-19 02:05:48,525] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-06-19 02:05:48,546] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-06-19 02:05:48,593] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-06-19 02:05:48,620] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-06-19 02:05:48,657] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-06-19 02:05:48,687] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-06-19 02:05:48,753] [pool-1-thread-12] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-06-19 02:05:48,818] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-06-19 02:05:48,841] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-06-19 02:05:48,928] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-06-19 02:05:48,969] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-06-19 02:05:49,045] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-06-19 02:05:49,201] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-06-19 02:05:49,215] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-06-19 02:05:49,225] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-06-19 02:05:49,274] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-06-19 02:05:49,297] [pool-1-thread-5] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-06-19 02:05:49,392] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-06-19 02:05:49,473] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-06-19 02:05:49,535] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-06-19 02:05:49,624] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-06-19 02:05:49,655] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-06-19 02:05:49,727] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits: [testng] [2024-06-19 02:05:49,777] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-06-19 02:05:49,813] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-06-19 02:05:49,865] [pool-1-thread-8] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-06-19 02:05:49,883] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-06-19 02:05:49,932] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-06-19 02:05:49,988] [pool-1-thread-4] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-06-19 02:05:50,050] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-06-19 02:05:50,089] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-06-19 02:05:50,138] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-06-19 02:05:50,377] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-06-19 02:05:50,404] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-06-19 02:05:50,456] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-06-19 02:05:50,548] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-06-19 02:05:50,593] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-06-19 02:05:50,621] [pool-1-thread-1] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-06-19 02:05:50,660] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-06-19 02:05:50,729] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-06-19 02:05:50,836] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-06-19 02:05:50,878] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-06-19 02:05:51,004] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-06-19 02:05:51,087] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-06-19 02:05:51,156] [pool-1-thread-10] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-06-19 02:05:51,220] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-06-19 02:05:51,246] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-06-19 02:05:51,277] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-06-19 02:05:51,438] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-06-19 02:05:51,535] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-06-19 02:05:51,541] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-06-19 02:05:51,781] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-06-19 02:05:51,908] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-06-19 02:05:51,939] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-06-19 02:05:51,972] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-06-19 02:05:52,063] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-06-19 02:05:52,141] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-06-19 02:05:52,264] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-06-19 02:05:52,348] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-06-19 02:05:52,391] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-06-19 02:05:52,444] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] [2024-06-19 02:05:52,451] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-06-19 02:05:52,515] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-06-19 02:05:52,630] [pool-1-thread-6] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS