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Started by upstream project "BIOFORMATS-test-repo" build number 98 originally caused by: Started by upstream project "Trigger" build number 109 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15929455078761891246.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15099_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:26:33,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:26:33,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:26:33,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:33,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:33,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:26:33,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:26:33,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:26:33,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:33,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:33,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:26:33,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:26:33,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:26:33,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:33,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:33,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:33,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:33,714 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:33,714 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:33,714 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:33,715 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:33,715 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:26:33,715 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:26:33,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-20 01:26:33,724] [main] java.version = 21 [testng] 01:26:33,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:33,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:33,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-20_01-26-33.log] [testng] 01:26:33,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-20 01:26:33,771] [main] testng.directory = /data [testng] [2024-06-20 01:26:33,771] [main] testng.configDirectory = /config [testng] [2024-06-20 01:26:33,779] [main] testng.multiplier = 1.0 [testng] [2024-06-20 01:26:33,780] [main] testng.in-memory = false [testng] [2024-06-20 01:26:33,780] [main] testng.allow-missing = false [testng] [2024-06-20 01:26:33,780] [main] user.language = en [testng] [2024-06-20 01:26:33,780] [main] user.country = ${user.country} [testng] [2024-06-20 01:26:33,780] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-20 01:26:34,146] [main] ---------------------------------------- [testng] [2024-06-20 01:26:34,146] [main] Total files: 21 [testng] [2024-06-20 01:26:34,147] [main] Scan time: 0.366 s (17 ms/file) [testng] [2024-06-20 01:26:34,147] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-20 01:26:35,020] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA: [testng] 01:26:35,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:35,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-20_01-26-35.log] [testng] 01:26:35,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4297ab26 - End of configuration. [testng] [2024-06-20 01:26:35,038] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA: [testng] 01:26:35,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:35,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-20_01-26-35.log] [testng] 01:26:35,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a6c0258 - End of configuration. [testng] [2024-06-20 01:26:35,048] [pool-1-thread-11] Initializing /data/samples/UBW8.TGA: [testng] 01:26:35,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:35,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-20_01-26-35.log] [testng] 01:26:35,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1dddc9 - End of configuration. [testng] [2024-06-20 01:26:35,062] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] 01:26:35,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:35,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-20_01-26-35.log] [testng] 01:26:35,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4283052f - End of configuration. [testng] [2024-06-20 01:26:35,075] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 01:26:35,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:35,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-20_01-26-35.log] [testng] 01:26:35,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10e44396 - End of configuration. [testng] [2024-06-20 01:26:35,085] [pool-1-thread-8] Initializing /data/samples/XING_B24.TGA: [testng] 01:26:35,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:35,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-20_01-26-35.log] [testng] 01:26:35,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6add677e - End of configuration. [testng] [2024-06-20 01:26:35,094] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 01:26:35,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:35,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-20_01-26-35.log] [testng] 01:26:35,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc348d1 - End of configuration. [testng] [2024-06-20 01:26:35,104] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:26:35,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:35,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-20_01-26-35.log] [testng] 01:26:35,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54220cff - End of configuration. [testng] [2024-06-20 01:26:35,115] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] 01:26:35,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:35,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-20_01-26-35.log] [testng] 01:26:35,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d712584 - End of configuration. [testng] [2024-06-20 01:26:35,127] [pool-1-thread-4] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:26:35,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:35,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-20_01-26-35.log] [testng] 01:26:35,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2973fbc3 - End of configuration. [testng] [2024-06-20 01:26:35,136] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:26:35,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:35,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-20_01-26-35.log] [testng] 01:26:35,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368ecaa7 - End of configuration. [testng] [2024-06-20 01:26:35,144] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA: [testng] 01:26:35,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:35,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:35,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-20_01-26-35.log] [testng] 01:26:35,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df2080b - End of configuration. [testng] [2024-06-20 01:26:37,029] [pool-1-thread-3] Initializing /data/samples/XING_T16.TGA: [testng] [2024-06-20 01:26:37,040] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA: [testng] [2024-06-20 01:26:37,051] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] [2024-06-20 01:26:37,060] [pool-1-thread-10] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-06-20 01:26:37,070] [pool-1-thread-2] Initializing /data/samples/CCM8.TGA: [testng] [2024-06-20 01:26:37,079] [pool-1-thread-9] Initializing /data/samples/XING_T24.TGA: [testng] [2024-06-20 01:26:37,096] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA: [testng] [2024-06-20 01:26:37,111] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA: [testng] [2024-06-20 01:26:37,123] [pool-1-thread-8] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS