![[Jenkins]](/jenkins/static/a3382f31/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 98 originally caused by: Started by upstream project "Trigger" build number 109 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1878021378438101577.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15112_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:30:15,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:30:15,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:30:15,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:15,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:15,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:30:15,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:30:15,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:30:15,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:15,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:15,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:30:15,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:30:15,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:30:16,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:16,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:16,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:16,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:16,119 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:16,119 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:16,120 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:16,120 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:16,120 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:30:16,121 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:30:16,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 313 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-20 01:30:16,133] [main] java.version = 21 [testng] 01:30:16,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:16,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:16,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-20_01-30-16.log] [testng] 01:30:16,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-20 01:30:16,194] [main] testng.directory = /data [testng] [2024-06-20 01:30:16,195] [main] testng.configDirectory = /config [testng] [2024-06-20 01:30:16,206] [main] testng.multiplier = 1.0 [testng] [2024-06-20 01:30:16,207] [main] testng.in-memory = false [testng] [2024-06-20 01:30:16,208] [main] testng.allow-missing = false [testng] [2024-06-20 01:30:16,208] [main] user.language = en [testng] [2024-06-20 01:30:16,208] [main] user.country = ${user.country} [testng] [2024-06-20 01:30:16,208] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-20 01:30:16,628] [main] ---------------------------------------- [testng] [2024-06-20 01:30:16,628] [main] Total files: 25 [testng] [2024-06-20 01:30:16,629] [main] Scan time: 0.42 s (16 ms/file) [testng] [2024-06-20 01:30:16,629] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-20 01:30:18,994] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] 01:30:18,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:18,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:18,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-20_01-30-18.log] [testng] 01:30:18,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16b709a3 - End of configuration. [testng] [2024-06-20 01:30:19,016] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] 01:30:19,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:19,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-20_01-30-19.log] [testng] 01:30:19,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5544db0d - End of configuration. [testng] [2024-06-20 01:30:19,023] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:30:19,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:19,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-20_01-30-19.log] [testng] 01:30:19,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cac88ed - End of configuration. [testng] [2024-06-20 01:30:19,158] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 01:30:19,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:19,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-20_01-30-19.log] [testng] 01:30:19,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44c9c346 - End of configuration. [testng] [2024-06-20 01:30:19,227] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] 01:30:19,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:19,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-20_01-30-19.log] [testng] 01:30:19,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@757b0ada - End of configuration. [testng] [2024-06-20 01:30:19,277] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 01:30:19,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:19,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-20_01-30-19.log] [testng] 01:30:19,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2adf31de - End of configuration. [testng] [2024-06-20 01:30:19,299] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:30:19,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:19,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-20_01-30-19.log] [testng] 01:30:19,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd19008 - End of configuration. [testng] [2024-06-20 01:30:19,425] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:30:19,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:19,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-20_01-30-19.log] [testng] 01:30:19,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41041080 - End of configuration. [testng] [2024-06-20 01:30:19,736] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: [testng] 01:30:19,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:19,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-20_01-30-19.log] [testng] 01:30:19,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ca52ea - End of configuration. [testng] [2024-06-20 01:30:19,771] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] 01:30:19,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:19,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-20_01-30-19.log] [testng] 01:30:19,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bbc3868 - End of configuration. [testng] [2024-06-20 01:30:19,821] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:30:19,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:19,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:19,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-20_01-30-19.log] [testng] 01:30:19,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f464403 - End of configuration. [testng] [2024-06-20 01:30:20,149] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] 01:30:20,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:20,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:20,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-20_01-30-20.log] [testng] 01:30:20,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@342a5d84 - End of configuration. [testng] [2024-06-20 01:30:22,043] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] [2024-06-20 01:30:22,113] [pool-1-thread-8] Initializing /data/brian/images/BLU.PCT: [testng] [2024-06-20 01:30:22,155] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] [2024-06-20 01:30:22,193] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-06-20 01:30:22,201] [pool-1-thread-12] Initializing /data/brian/images/GRN.PCT: [testng] [2024-06-20 01:30:22,479] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-06-20 01:30:22,500] [pool-1-thread-4] Initializing /data/brian/images/YEL.PCT: [testng] [2024-06-20 01:30:22,529] [pool-1-thread-2] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-06-20 01:30:22,629] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT: [testng] [2024-06-20 01:30:22,813] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-06-20 01:30:22,913] [pool-1-thread-12] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-06-20 01:30:22,984] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-06-20 01:30:23,002] [pool-1-thread-5] Initializing /data/misc/planet.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS