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Started by upstream project "BIOFORMATS-test-repo" build number 98 originally caused by: Started by upstream project "Trigger" build number 109 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8624917284058861623.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15150_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:02:51,686 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:02:51,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:02:51,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:51,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:51,689 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:02:51,689 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:02:51,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:02:51,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:51,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:51,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:02:51,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:02:51,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:02:51,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:51,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:51,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:51,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:51,876 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:51,876 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:51,876 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:51,877 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:51,877 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:02:51,878 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:02:51,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-20 02:02:51,886] [main] java.version = 21 [testng] 02:02:51,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:51,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:51,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-20_02-02-51.log] [testng] 02:02:51,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-20 02:02:51,933] [main] testng.directory = /data [testng] [2024-06-20 02:02:51,933] [main] testng.configDirectory = /config [testng] [2024-06-20 02:02:51,941] [main] testng.multiplier = 1.0 [testng] [2024-06-20 02:02:51,942] [main] testng.in-memory = false [testng] [2024-06-20 02:02:51,942] [main] testng.allow-missing = false [testng] [2024-06-20 02:02:51,942] [main] user.language = en [testng] [2024-06-20 02:02:51,942] [main] user.country = ${user.country} [testng] [2024-06-20 02:02:51,942] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-20 02:02:59,912] [main] ---------------------------------------- [testng] [2024-06-20 02:02:59,912] [main] Total files: 268 [testng] [2024-06-20 02:02:59,912] [main] Scan time: 7.97 s (29 ms/file) [testng] [2024-06-20 02:02:59,912] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-20 02:03:08,191] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] 02:03:08,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:03:08,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-20_02-03-08.log] [testng] 02:03:08,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@597e513e - End of configuration. [testng] [2024-06-20 02:03:08,215] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] 02:03:08,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:03:08,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-20_02-03-08.log] [testng] 02:03:08,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ab3e1c - End of configuration. [testng] [2024-06-20 02:03:08,245] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:03:08,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:03:08,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-20_02-03-08.log] [testng] 02:03:08,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@304df1d0 - End of configuration. [testng] [2024-06-20 02:03:08,286] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] 02:03:08,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:03:08,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-20_02-03-08.log] [testng] 02:03:08,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de8233d - End of configuration. [testng] [2024-06-20 02:03:08,301] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:03:08,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:03:08,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-20_02-03-08.log] [testng] 02:03:08,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f8efa5b - End of configuration. [testng] [2024-06-20 02:03:08,312] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] 02:03:08,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:03:08,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-20_02-03-08.log] [testng] 02:03:08,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@424f5b19 - End of configuration. [testng] [2024-06-20 02:03:08,356] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:03:08,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:03:08,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-20_02-03-08.log] [testng] 02:03:08,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45cbfe2f - End of configuration. [testng] [2024-06-20 02:03:08,376] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] 02:03:08,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:03:08,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-20_02-03-08.log] [testng] 02:03:08,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d768c71 - End of configuration. [testng] [2024-06-20 02:03:08,556] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:03:08,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:03:08,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-20_02-03-08.log] [testng] 02:03:08,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ee06d8f - End of configuration. [testng] [2024-06-20 02:03:08,597] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] 02:03:08,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:03:08,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-20_02-03-08.log] [testng] 02:03:08,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f9cd18 - End of configuration. [testng] [2024-06-20 02:03:08,623] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] 02:03:08,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:03:08,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-20_02-03-08.log] [testng] 02:03:08,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a01bf0c - End of configuration. [testng] [2024-06-20 02:03:08,650] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] 02:03:08,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:03:08,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-20_02-03-08.log] [testng] 02:03:08,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c696210 - End of configuration. [testng] [2024-06-20 02:03:10,141] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-06-20 02:03:10,160] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-06-20 02:03:10,179] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-06-20 02:03:10,194] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-06-20 02:03:10,214] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-06-20 02:03:10,432] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-06-20 02:03:10,606] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-06-20 02:03:10,708] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-06-20 02:03:10,734] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-06-20 02:03:10,892] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-06-20 02:03:10,916] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-06-20 02:03:10,945] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-06-20 02:03:11,061] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-06-20 02:03:11,103] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-06-20 02:03:11,172] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-06-20 02:03:11,197] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-06-20 02:03:11,217] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-06-20 02:03:11,345] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-06-20 02:03:11,360] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-06-20 02:03:11,493] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-06-20 02:03:11,546] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-06-20 02:03:11,625] [pool-1-thread-6] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-06-20 02:03:11,670] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-06-20 02:03:11,722] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-06-20 02:03:11,733] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-06-20 02:03:11,756] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-06-20 02:03:11,765] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-06-20 02:03:11,810] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-06-20 02:03:11,951] [pool-1-thread-1] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-06-20 02:03:11,987] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-06-20 02:03:12,112] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-06-20 02:03:12,149] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-06-20 02:03:12,190] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-06-20 02:03:12,251] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-06-20 02:03:12,262] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-06-20 02:03:12,276] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-06-20 02:03:12,341] [pool-1-thread-2] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-06-20 02:03:12,425] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-06-20 02:03:12,433] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-06-20 02:03:12,514] [pool-1-thread-4] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-06-20 02:03:12,579] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-06-20 02:03:12,612] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-06-20 02:03:12,637] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-06-20 02:03:12,645] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-06-20 02:03:12,668] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-06-20 02:03:12,712] [pool-1-thread-9] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-06-20 02:03:12,796] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-06-20 02:03:12,890] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-06-20 02:03:12,915] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-06-20 02:03:12,941] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-06-20 02:03:12,973] [pool-1-thread-6] Initializing /data/steve/FITS/M104.fits: [testng] [2024-06-20 02:03:13,061] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-06-20 02:03:13,138] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-06-20 02:03:13,178] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-06-20 02:03:13,267] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-06-20 02:03:13,318] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-06-20 02:03:13,330] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-06-20 02:03:13,364] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-06-20 02:03:13,455] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-06-20 02:03:13,468] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-06-20 02:03:13,478] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-06-20 02:03:13,530] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-06-20 02:03:13,559] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-06-20 02:03:13,717] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-06-20 02:03:13,761] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-06-20 02:03:13,797] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-06-20 02:03:13,841] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-06-20 02:03:13,902] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-06-20 02:03:13,949] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-06-20 02:03:13,987] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-06-20 02:03:13,997] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-06-20 02:03:14,066] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-06-20 02:03:14,124] [pool-1-thread-10] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-06-20 02:03:14,155] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-06-20 02:03:14,214] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-06-20 02:03:14,227] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-06-20 02:03:14,250] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-06-20 02:03:14,305] [pool-1-thread-9] Initializing /data/steve/FITS/M13.fits: [testng] [2024-06-20 02:03:14,311] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-06-20 02:03:14,380] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-06-20 02:03:14,422] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-06-20 02:03:14,451] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-06-20 02:03:14,511] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-06-20 02:03:14,553] [pool-1-thread-1] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-06-20 02:03:14,571] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-06-20 02:03:14,583] [pool-1-thread-5] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-06-20 02:03:14,666] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-06-20 02:03:14,680] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-06-20 02:03:14,693] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-06-20 02:03:14,764] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-06-20 02:03:14,799] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-06-20 02:03:14,809] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-06-20 02:03:14,921] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-06-20 02:03:14,938] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-06-20 02:03:14,957] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-06-20 02:03:15,009] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-06-20 02:03:15,067] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-06-20 02:03:15,113] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-06-20 02:03:15,143] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-06-20 02:03:15,161] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-06-20 02:03:15,235] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-06-20 02:03:15,249] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-06-20 02:03:15,309] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-06-20 02:03:15,388] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-06-20 02:03:15,450] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-06-20 02:03:15,503] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-06-20 02:03:15,555] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-06-20 02:03:15,590] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-06-20 02:03:15,613] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-06-20 02:03:15,636] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-06-20 02:03:15,645] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-06-20 02:03:15,683] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-06-20 02:03:15,711] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-06-20 02:03:15,756] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-06-20 02:03:15,876] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-06-20 02:03:15,914] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-06-20 02:03:15,974] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-06-20 02:03:16,030] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-06-20 02:03:16,043] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-06-20 02:03:16,055] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-06-20 02:03:16,140] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-06-20 02:03:16,164] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-06-20 02:03:16,191] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-06-20 02:03:16,221] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-06-20 02:03:16,277] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-06-20 02:03:16,302] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-06-20 02:03:16,307] [pool-1-thread-5] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-06-20 02:03:16,349] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-06-20 02:03:16,387] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-06-20 02:03:16,458] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-06-20 02:03:16,493] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-06-20 02:03:16,521] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-06-20 02:03:16,569] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-06-20 02:03:16,638] [pool-1-thread-11] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-06-20 02:03:16,733] [pool-1-thread-9] Initializing /data/steve/FITS/M51.fits: [testng] [2024-06-20 02:03:16,737] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-06-20 02:03:16,748] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-06-20 02:03:16,778] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-06-20 02:03:16,858] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-06-20 02:03:16,926] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-06-20 02:03:16,972] [pool-1-thread-8] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-06-20 02:03:16,997] [pool-1-thread-7] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-06-20 02:03:17,018] [pool-1-thread-6] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-06-20 02:03:17,047] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-06-20 02:03:17,098] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-06-20 02:03:17,104] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-06-20 02:03:17,150] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-06-20 02:03:17,249] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS