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Started by upstream project "BIOFORMATS-test-repo" build number 10 originally caused by: Started by upstream project "Trigger" build number 13 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15298905423847274099.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1531_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:08:47,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:08:47,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:08:47,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:08:47,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:08:47,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:08:47,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:08:47,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:08:47,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:08:47,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:08:47,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:08:47,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:08:47,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:08:48,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:08:48,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:08:48,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:08:48,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:08:48,058 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:08:48,058 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:08:48,059 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:08:48,059 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:08:48,059 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:08:48,060 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:08:48,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-24 01:08:48,070] [main] java.version = 17.0.2 [testng] 01:08:48,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:08:48,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:08:48,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-24_01-08-48.log] [testng] 01:08:48,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-24 01:08:48,129] [main] testng.directory = /data [testng] [2024-03-24 01:08:48,129] [main] testng.configDirectory = /config [testng] [2024-03-24 01:08:48,140] [main] testng.multiplier = 1.0 [testng] [2024-03-24 01:08:48,141] [main] testng.in-memory = false [testng] [2024-03-24 01:08:48,141] [main] testng.allow-missing = false [testng] [2024-03-24 01:08:48,142] [main] user.language = en [testng] [2024-03-24 01:08:48,142] [main] user.country = ${user.country} [testng] [2024-03-24 01:08:48,142] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-24 01:17:43,729] [main] ---------------------------------------- [testng] [2024-03-24 01:17:43,730] [main] Total files: 7329 [testng] [2024-03-24 01:17:43,730] [main] Scan time: 535.587 s (73 ms/file) [testng] [2024-03-24 01:17:43,730] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-24 01:22:25,060] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 01:22:25,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:25,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-24_01-22-25.log] [testng] 01:22:25,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13fea6a - End of configuration. [testng] [2024-03-24 01:22:25,355] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 01:22:25,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:25,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-24_01-22-25.log] [testng] 01:22:25,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ad48fa - End of configuration. [testng] [2024-03-24 01:22:25,862] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 01:22:25,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:25,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-24_01-22-25.log] [testng] 01:22:25,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cb42a60 - End of configuration. [testng] [2024-03-24 01:22:26,317] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-24 01:22:26,319] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 01:22:26,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:26,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:26,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-24_01-22-26.log] [testng] 01:22:26,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d90038a - End of configuration. [testng] [2024-03-24 01:22:26,667] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:22:26,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:26,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:26,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-24_01-22-26.log] [testng] 01:22:26,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7479e8d8 - End of configuration. [testng] [2024-03-24 01:22:26,981] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 01:22:26,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:26,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:26,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-24_01-22-26.log] [testng] 01:22:26,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@385fc257 - End of configuration. [testng] [2024-03-24 01:22:27,342] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 01:22:27,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:27,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-24_01-22-27.log] [testng] 01:22:27,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61640b88 - End of configuration. [testng] [2024-03-24 01:22:27,709] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-24 01:22:27,711] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 01:22:27,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:27,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-24_01-22-27.log] [testng] 01:22:27,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@99c0c00 - End of configuration. [testng] [2024-03-24 01:22:28,084] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 01:22:28,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:28,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:28,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-24_01-22-28.log] [testng] 01:22:28,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c2c8d5 - End of configuration. [testng] [2024-03-24 01:22:28,495] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 01:22:28,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:28,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:28,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-24_01-22-28.log] [testng] 01:22:28,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ec9bda6 - End of configuration. [testng] [2024-03-24 01:22:28,812] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 01:22:28,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:28,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:28,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-24_01-22-28.log] [testng] 01:22:28,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44aea6d1 - End of configuration. [testng] [2024-03-24 01:22:31,026] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 01:22:31,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:31,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:31,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-24_01-22-31.log] [testng] 01:22:31,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@399e8bdd - End of configuration. [testng] [2024-03-24 01:22:35,643] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-24 01:22:36,127] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-24 01:22:36,604] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-24 01:22:37,188] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-24 01:22:39,159] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-24 01:22:39,864] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-24 01:22:40,172] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-24 01:22:40,597] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-24 01:22:41,105] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-03-24 01:22:42,344] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-03-24 01:22:42,888] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-24 01:22:43,522] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-24 01:22:44,039] [pool-1-thread-9] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-24 01:22:45,498] [pool-1-thread-10] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-24 01:22:47,353] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-24 01:22:48,781] [pool-1-thread-9] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-24 01:22:50,559] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-03-24 01:22:52,460] [pool-1-thread-10] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-24 01:22:52,979] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-24 01:22:53,385] [pool-1-thread-12] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-24 01:22:55,128] [pool-1-thread-8] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-24 01:22:56,545] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-24 01:22:57,076] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-24 01:22:57,630] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-24 01:22:57,956] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-24 01:22:58,257] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-24 01:22:59,566] [pool-1-thread-10] Initializing /data/josh/2101to800.stk: [testng] [2024-03-24 01:23:01,637] [pool-1-thread-6] Initializing /data/samples/zserEight.stk: [testng] [2024-03-24 01:23:01,870] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-24 01:23:06,198] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-24 01:23:07,330] [pool-1-thread-7] Initializing /data/samples/zserSixteen.stk: [testng] [2024-03-24 01:23:08,185] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:23:08,894] [pool-1-thread-1] Initializing /data/ascb/golgi marker.tif: [testng] [2024-03-24 01:23:09,752] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-24 01:23:10,745] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-24 01:23:14,212] [pool-1-thread-7] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-24 01:23:15,822] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:23:17,849] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-24 01:23:19,330] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-24 01:23:25,818] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-24 01:23:26,580] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-03-24 01:23:28,006] [pool-1-thread-9] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-03-24 01:23:31,099] [pool-1-thread-7] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-24 01:23:33,683] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-03-24 01:23:34,582] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-24 01:23:34,584] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-24 01:23:37,027] [pool-1-thread-10] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-24 01:23:37,759] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-24 01:23:38,439] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-24 01:23:38,457] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-24 01:23:39,404] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-24 01:23:41,967] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-24 01:23:42,978] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-03-24 01:23:43,521] [pool-1-thread-8] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-24 01:24:03,555] [pool-1-thread-3] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-24 01:24:06,255] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-24 01:24:07,299] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-24 01:24:08,116] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-03-24 01:24:08,979] [pool-1-thread-4] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-24 01:24:14,665] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-24 01:24:15,583] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-24 01:24:19,864] [pool-1-thread-10] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-24 01:24:21,715] [pool-1-thread-5] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-24 01:24:28,014] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-24 01:24:28,968] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-24 01:24:29,872] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-24 01:24:30,758] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-24 01:24:33,208] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-24 01:24:34,496] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-24 01:24:35,362] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full 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[testng] [2024-03-24 01:25:18,226] [pool-1-thread-12] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-24 01:25:18,776] [pool-1-thread-7] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-03-24 01:25:21,090] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-24 01:25:22,107] [pool-1-thread-12] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-24 01:25:22,865] [pool-1-thread-1] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-24 01:25:25,920] [pool-1-thread-9] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-03-24 01:25:26,597] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-24 01:25:28,857] [pool-1-thread-10] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-24 01:25:36,495] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-03-24 01:25:37,190] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-24 01:25:37,191] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-24 01:25:38,728] [pool-1-thread-7] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-24 01:25:39,734] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:25:40,614] [pool-1-thread-2] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-24 01:25:41,219] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-24 01:25:43,588] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-24 01:25:44,444] [pool-1-thread-2] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-24 01:25:48,438] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-24 01:25:49,356] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-24 01:25:50,972] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-24 01:25:53,145] [pool-1-thread-4] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-24 01:25:53,809] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-24 01:25:54,473] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:25:55,050] [pool-1-thread-12] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-24 01:25:55,638] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-24 01:25:56,866] [pool-1-thread-6] Initializing /data/samples/zseries.stk: [testng] [2024-03-24 01:25:59,439] [pool-1-thread-9] Initializing 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MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-24 01:26:24,854] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2024-03-24 01:26:26,230] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-24 01:26:28,530] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-24 01:26:29,113] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:26:30,688] [pool-1-thread-9] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-24 01:26:31,693] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-24 01:26:34,947] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-24 01:26:35,818] [pool-1-thread-6] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-24 01:26:37,779] [pool-1-thread-10] Initializing 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Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-24 01:26:47,175] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-24 01:26:48,286] [pool-1-thread-3] Initializing /data/dave/Z Series.stk: [testng] [2024-03-24 01:26:48,825] [pool-1-thread-7] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-24 01:26:50,923] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-24 01:26:51,453] [pool-1-thread-6] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-24 01:26:52,067] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:26:52,689] [pool-1-thread-5] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-24 01:26:53,206] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-24 01:26:54,845] [pool-1-thread-7] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-24 01:26:59,829] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-24 01:27:00,758] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-24 01:27:00,759] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-24 01:27:03,340] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-24 01:27:05,927] [pool-1-thread-5] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-24 01:27:07,263] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-24 01:27:09,575] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-24 01:27:11,697] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-24 01:27:13,565] [pool-1-thread-5] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-24 01:27:16,094] [pool-1-thread-11] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-24 01:27:16,721] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-24 01:27:17,648] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-24 01:27:22,525] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-24 01:27:25,800] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-24 01:27:29,104] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-24 01:27:31,076] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-24 01:27:31,661] [pool-1-thread-9] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-24 01:27:33,708] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-24 01:27:35,588] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-24 01:27:36,492] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-03-24 01:27:38,568] [pool-1-thread-11] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-24 01:27:41,227] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-24 01:27:43,726] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-24 01:27:44,800] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-24 01:27:45,580] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-24 01:27:48,304] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-03-24 01:27:50,850] [pool-1-thread-5] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-24 01:27:52,906] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-24 01:27:54,006] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:27:55,001] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-03-24 01:27:55,741] [pool-1-thread-5] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-24 01:27:59,273] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-24 01:28:00,675] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-03-24 01:28:01,471] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-24 01:28:02,050] [pool-1-thread-9] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-24 01:28:05,488] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-24 01:28:05,930] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-24 01:28:07,790] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-24 01:28:08,791] [pool-1-thread-10] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-24 01:28:11,139] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-24 01:28:11,820] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-24 01:28:12,509] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-24 01:28:13,456] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-24 01:28:14,516] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-24 01:28:17,079] [pool-1-thread-5] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-24 01:28:18,547] [pool-1-thread-12] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-24 01:28:22,003] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-24 01:28:22,543] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-24 01:28:22,969] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-24 01:28:24,506] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-24 01:28:27,417] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-24 01:28:27,839] [pool-1-thread-8] Initializing /data/jerome/deconv.STK: [testng] [2024-03-24 01:28:28,576] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-24 01:28:34,924] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-24 01:28:35,376] [pool-1-thread-10] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-24 01:28:54,087] [pool-1-thread-8] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 73 minutes 21 seconds Finished: SUCCESS