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Started by upstream project "BIOFORMATS-test-repo" build number 99 originally caused by: Started by upstream project "Trigger" build number 110 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14875918830328118772.sh + '[' avi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15311_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:02:46,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:02:46,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:02:46,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:46,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:46,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:02:46,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:02:46,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:02:46,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:46,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:47,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:47,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:47,141 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:47,141 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:47,142 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:47,142 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:47,142 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:02:47,144 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:02:47,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 497 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-21 02:02:47,171] [main] java.version = 1.8.0_342 [testng] 02:02:47,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:47,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:47,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-21_02-02-47.log] [testng] 02:02:47,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-21 02:02:47,358] [main] testng.directory = /data [testng] [2024-06-21 02:02:47,359] [main] testng.configDirectory = /config [testng] [2024-06-21 02:02:47,437] [main] testng.multiplier = 1.0 [testng] [2024-06-21 02:02:47,438] [main] testng.in-memory = false [testng] [2024-06-21 02:02:47,438] [main] testng.allow-missing = false [testng] [2024-06-21 02:02:47,438] [main] user.language = en [testng] [2024-06-21 02:02:47,438] [main] user.country = ${user.country} [testng] [2024-06-21 02:02:47,438] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-21 02:02:48,673] [main] ---------------------------------------- [testng] [2024-06-21 02:02:48,673] [main] Total files: 40 [testng] [2024-06-21 02:02:48,673] [main] Scan time: 1.234 s (30 ms/file) [testng] [2024-06-21 02:02:48,673] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-21 02:07:05,962] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 02:07:05,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:05,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:05,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-21_02-07-05.log] [testng] 02:07:05,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@119c4dd0 - End of configuration. [testng] [2024-06-21 02:07:06,030] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:07:06,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:06,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-21_02-07-06.log] [testng] 02:07:06,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb86235 - End of configuration. [testng] [2024-06-21 02:07:06,089] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 02:07:06,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:06,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-21_02-07-06.log] [testng] 02:07:06,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6865b510 - End of configuration. [testng] [2024-06-21 02:07:06,108] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:07:06,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:06,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-21_02-07-06.log] [testng] 02:07:06,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b06514f - End of configuration. [testng] [2024-06-21 02:07:06,222] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 02:07:06,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:06,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-21_02-07-06.log] [testng] 02:07:06,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@273109ac - End of configuration. [testng] [2024-06-21 02:07:06,235] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] 02:07:06,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:06,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-21_02-07-06.log] [testng] 02:07:06,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca64e67 - End of configuration. [testng] [2024-06-21 02:07:14,386] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 02:07:14,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:14,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-21_02-07-14.log] [testng] 02:07:14,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301e1070 - End of configuration. [testng] [2024-06-21 02:07:14,678] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:07:14,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:14,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-21_02-07-14.log] [testng] 02:07:14,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eafbe6f - End of configuration. [testng] [2024-06-21 02:07:14,711] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:07:14,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:14,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-21_02-07-14.log] [testng] 02:07:14,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@433fe316 - End of configuration. [testng] [2024-06-21 02:07:14,774] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:07:14,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:14,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-21_02-07-14.log] [testng] 02:07:14,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62fd6f1 - End of configuration. [testng] [2024-06-21 02:07:14,807] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:07:14,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:14,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-21_02-07-14.log] [testng] 02:07:14,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e6b8c41 - End of configuration. [testng] [2024-06-21 02:07:14,878] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:07:14,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:14,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:14,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-21_02-07-14.log] [testng] 02:07:14,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8810b22 - End of configuration. [testng] [2024-06-21 02:07:17,501] [pool-1-thread-4] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-06-21 02:07:17,508] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-06-21 02:07:17,568] [pool-1-thread-11] Initializing /data/ascb/TIRF.avi: [testng] [2024-06-21 02:07:17,886] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-06-21 02:07:17,936] [pool-1-thread-2] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-06-21 02:07:18,015] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi: [testng] [2024-06-21 02:07:18,105] [pool-1-thread-1] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-06-21 02:07:18,125] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-06-21 02:07:18,163] [pool-1-thread-10] Initializing /data/william/worm.avi: [testng] [2024-06-21 02:07:18,175] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-06-21 02:07:18,358] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-06-21 02:07:18,578] [pool-1-thread-10] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-06-21 02:07:18,764] [pool-1-thread-4] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-06-21 02:07:58,737] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-06-21 02:07:58,803] [pool-1-thread-1] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-06-21 02:07:59,015] [pool-1-thread-5] Initializing /data/kurt/40x_6um.avi: [testng] [2024-06-21 02:07:59,075] [pool-1-thread-6] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-06-21 02:07:59,107] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-06-21 02:07:59,139] [pool-1-thread-11] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-06-21 02:07:59,188] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-06-21 02:07:59,425] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-06-21 02:07:59,731] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-06-21 02:08:00,379] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-06-21 02:08:00,411] [pool-1-thread-6] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-06-21 02:08:00,507] [pool-1-thread-3] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-06-21 02:08:00,599] [pool-1-thread-10] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 32 seconds Finished: SUCCESS