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Started by upstream project "BIOFORMATS-test-repo" build number 99
originally caused by:
 Started by upstream project "Trigger" build number 110
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8524857220469890566.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_15359_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:35:17,852 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:35:17,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 02:35:17,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:35:17,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:35:17,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:35:17,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:35:17,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:35:17,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:35:17,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:35:17,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:35:17,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:35:17,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:35:18,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:35:18,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:35:18,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:35:18,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:35:18,510 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:35:18,510 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:35:18,510 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:35:18,511 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:35:18,511 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 02:35:18,512 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 02:35:18,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 655 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-21 02:35:18,538] [main] java.version = 1.8.0_342
   [testng] 02:35:18,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:35:18,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:18,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-21_02-35-18.log]
   [testng] 02:35:18,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-21 02:35:18,723] [main] testng.directory = /data
   [testng] [2024-06-21 02:35:18,723] [main] testng.configDirectory = /config
   [testng] [2024-06-21 02:35:18,791] [main] testng.multiplier = 1.0
   [testng] [2024-06-21 02:35:18,792] [main] testng.in-memory = false
   [testng] [2024-06-21 02:35:18,792] [main] testng.allow-missing = false
   [testng] [2024-06-21 02:35:18,792] [main] user.language = en
   [testng] [2024-06-21 02:35:18,792] [main] user.country = ${user.country}
   [testng] [2024-06-21 02:35:18,792] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-21 02:35:19,909] [main] ----------------------------------------
   [testng] [2024-06-21 02:35:19,909] [main] Total files: 32
   [testng] [2024-06-21 02:35:19,909] [main] Scan time: 1.117 s (34 ms/file)
   [testng] [2024-06-21 02:35:19,909] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 32 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-21 02:35:23,419] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc: 
   [testng] 02:35:23,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:35:23,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-21_02-35-23.log]
   [testng] 02:35:23,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2531d5df - End of configuration.
   [testng] [2024-06-21 02:35:23,451] [pool-1-thread-12] Initializing /data/geert/good example1.1sc.jpg: 
   [testng] 02:35:23,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:35:23,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-21_02-35-23.log]
   [testng] 02:35:23,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@543677f1 - End of configuration.
   [testng] [2024-06-21 02:35:23,472] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: 
   [testng] 02:35:23,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:35:23,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-21_02-35-23.log]
   [testng] 02:35:23,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7536500a - End of configuration.
   [testng] [2024-06-21 02:35:23,553] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: 
   [testng] 02:35:23,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:35:23,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-21_02-35-23.log]
   [testng] 02:35:23,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e68e41 - End of configuration.
   [testng] [2024-06-21 02:35:23,617] [pool-1-thread-9] Initializing /data/qa-29469/bad3.1sc: 
   [testng] 02:35:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:35:23,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-21_02-35-23.log]
   [testng] 02:35:23,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38df2e07 - End of configuration.
   [testng] [2024-06-21 02:35:23,670] [pool-1-thread-8] Initializing /data/david/Opened in imageJ.tiff: 
   [testng] 02:35:23,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:35:23,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-21_02-35-23.log]
   [testng] 02:35:23,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@513714d3 - End of configuration.
   [testng] [2024-06-21 02:35:23,713] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: 
   [testng] 02:35:23,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:35:23,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-21_02-35-23.log]
   [testng] 02:35:23,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a8fe89 - End of configuration.
   [testng] [2024-06-21 02:35:23,783] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc: 
   [testng] 02:35:23,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:35:23,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-21_02-35-23.log]
   [testng] 02:35:23,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddf3af3 - End of configuration.
   [testng] [2024-06-21 02:35:23,801] [pool-1-thread-5] Initializing /data/keith/test2.1sc: 
   [testng] 02:35:23,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:35:23,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-21_02-35-23.log]
   [testng] 02:35:23,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b75fb08 - End of configuration.
   [testng] [2024-06-21 02:35:23,817] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: 
   [testng] 02:35:23,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:35:23,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-21_02-35-23.log]
   [testng] 02:35:23,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c4753c - End of configuration.
   [testng] [2024-06-21 02:35:23,846] [pool-1-thread-3] Initializing /data/keith/pg020410saur3.1sc: 
   [testng] 02:35:23,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:35:23,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-21_02-35-23.log]
   [testng] 02:35:23,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e3ff06e - End of configuration.
   [testng] [2024-06-21 02:35:23,872] [pool-1-thread-2] Initializing /data/keith/test.1sc: 
   [testng] 02:35:23,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:35:23,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:35:23,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-21_02-35-23.log]
   [testng] 02:35:23,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715a2c9d - End of configuration.
   [testng] [2024-06-21 02:35:25,870] [pool-1-thread-2] Initializing /data/adrian/test_img.1sc: 
   [testng] [2024-06-21 02:35:25,902] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: 
   [testng] [2024-06-21 02:35:25,942] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: 
   [testng] [2024-06-21 02:35:26,011] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 59min: 
   [testng] [2024-06-21 02:35:26,043] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: 
   [testng] [2024-06-21 02:35:26,073] [pool-1-thread-12] Initializing /data/qa-29459/bad.1sc: 
   [testng] [2024-06-21 02:35:26,136] [pool-1-thread-6] Initializing /data/david/Converted in Quantity One (Biorad).tiff: 
   [testng] [2024-06-21 02:35:26,179] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc: 
   [testng] [2024-06-21 02:35:26,403] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: 
   [testng] [2024-06-21 02:35:26,737] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg: 
   [testng] [2024-06-21 02:35:26,751] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg: 
   [testng] [2024-06-21 02:35:26,797] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: 
   [testng] [2024-06-21 02:35:27,163] [pool-1-thread-6] Initializing /data/samples/imagesEight.1sc: 
   [testng] [2024-06-21 02:35:27,371] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc: 
   [testng] [2024-06-21 02:35:27,844] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 18min: 
   [testng] [2024-06-21 02:35:27,904] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: 
   [testng] [2024-06-21 02:35:27,945] [pool-1-thread-8] Initializing /data/qa-29469/good.1sc: 
   [testng] [2024-06-21 02:35:28,146] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 57min: 
   [testng] [2024-06-21 02:35:28,261] [pool-1-thread-12] Initializing /data/david/Original Biorad Gel format file.1sc: 
   [testng] [2024-06-21 02:35:28,307] [pool-1-thread-3] Initializing /data/keith/PF020426MRSA v2.1sc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1696, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS