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Started by upstream project "BIOFORMATS-test-repo" build number 99 originally caused by: Started by upstream project "Trigger" build number 110 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11722202090376369202.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15381_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:49:55,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:49:55,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:49:55,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:49:55,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:49:55,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:49:55,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:49:55,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:49:55,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:49:55,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:49:55,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:49:55,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:49:55,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:49:55,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:49:55,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:49:55,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:49:55,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:49:55,753 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:49:55,753 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:49:55,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:49:55,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:49:55,754 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:49:55,755 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:49:55,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 309 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-21 02:49:55,766] [main] java.version = 1.8.0_342 [testng] 02:49:55,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:49:55,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:55,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-21_02-49-55.log] [testng] 02:49:55,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-21 02:49:55,828] [main] testng.directory = /data [testng] [2024-06-21 02:49:55,828] [main] testng.configDirectory = /config [testng] [2024-06-21 02:49:55,845] [main] testng.multiplier = 1.0 [testng] [2024-06-21 02:49:55,845] [main] testng.in-memory = false [testng] [2024-06-21 02:49:55,845] [main] testng.allow-missing = false [testng] [2024-06-21 02:49:55,846] [main] user.language = en [testng] [2024-06-21 02:49:55,846] [main] user.country = ${user.country} [testng] [2024-06-21 02:49:55,846] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-21 02:49:58,022] [main] ---------------------------------------- [testng] [2024-06-21 02:49:58,022] [main] Total files: 31 [testng] [2024-06-21 02:49:58,022] [main] Scan time: 2.176 s (70 ms/file) [testng] [2024-06-21 02:49:58,022] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-21 02:50:00,578] [pool-1-thread-1] Initializing /data/vikram/Captured 4.jp2: [testng] 02:50:00,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:50:00,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:00,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-21_02-50-00.log] [testng] 02:50:00,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c2c412c - End of configuration. [testng] [2024-06-21 02:50:00,624] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf: [testng] 02:50:00,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:50:00,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:00,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-21_02-50-00.log] [testng] 02:50:00,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ff930e - End of configuration. [testng] [2024-06-21 02:50:00,639] [pool-1-thread-11] Initializing /data/venu/Multichannel 3a.jpg: [testng] 02:50:00,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:50:00,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:00,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-21_02-50-00.log] [testng] 02:50:00,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdb82a8 - End of configuration. [testng] [2024-06-21 02:50:00,911] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] 02:50:00,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:50:00,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:00,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-21_02-50-00.log] [testng] 02:50:00,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cfa8 - End of configuration. [testng] [2024-06-21 02:50:00,935] [pool-1-thread-9] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 02:50:00,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:50:00,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:00,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-21_02-50-00.log] [testng] 02:50:00,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@749bb0e9 - End of configuration. [testng] [2024-06-21 02:50:00,971] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] 02:50:00,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:50:00,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:00,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-21_02-50-00.log] [testng] 02:50:00,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@533f0f6f - End of configuration. [testng] [2024-06-21 02:50:01,002] [pool-1-thread-7] Initializing /data/vikram/Captured 1.jp2: [testng] 02:50:01,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:50:01,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:01,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-21_02-50-01.log] [testng] 02:50:01,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7829b26f - End of configuration. [testng] [2024-06-21 02:50:01,026] [pool-1-thread-6] Initializing /data/kraig/head.jp2: [testng] 02:50:01,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:50:01,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:01,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-21_02-50-01.log] [testng] 02:50:01,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65b3a844 - End of configuration. [testng] [2024-06-21 02:50:01,056] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jpc: [testng] 02:50:01,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:50:01,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:01,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-21_02-50-01.log] [testng] 02:50:01,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e72bd80 - End of configuration. [testng] [2024-06-21 02:50:01,072] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jp2: [testng] 02:50:01,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:50:01,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:01,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-21_02-50-01.log] [testng] 02:50:01,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44334181 - End of configuration. [testng] [2024-06-21 02:50:01,085] [pool-1-thread-3] Initializing /data/big-images/2kx2k.jpf: [testng] 02:50:01,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:50:01,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:01,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-21_02-50-01.log] [testng] 02:50:01,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bfc75c0 - End of configuration. [testng] [2024-06-21 02:50:01,110] [pool-1-thread-2] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 02:50:01,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:50:01,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:01,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-21_02-50-01.log] [testng] 02:50:01,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c530d81 - End of configuration. [testng] [2024-06-21 02:50:03,798] [pool-1-thread-7] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-06-21 02:50:03,821] [pool-1-thread-5] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-06-21 02:50:03,925] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-06-21 02:50:03,960] [pool-1-thread-11] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-06-21 02:50:04,383] [pool-1-thread-1] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-06-21 02:50:04,790] [pool-1-thread-8] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-06-21 02:50:04,824] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-06-21 02:50:06,288] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] [2024-06-21 02:50:06,621] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-06-21 02:50:07,499] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2: [testng] [2024-06-21 02:50:08,480] [pool-1-thread-8] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-06-21 02:50:10,416] [pool-1-thread-2] Initializing /data/frans/flower.jp2: [testng] [2024-06-21 02:50:14,055] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-06-21 02:50:14,302] [pool-1-thread-3] Initializing /data/david/000000_000001.jpx: [testng] [2024-06-21 02:50:14,453] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-06-21 02:50:20,274] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-06-21 02:50:23,230] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-06-21 02:50:25,550] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 58 seconds Finished: SUCCESS