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Started by upstream project "BIOFORMATS-test-repo" build number 100 originally caused by: Started by upstream project "Trigger" build number 111 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16540498203130681556.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15474_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:59:47,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:59:47,099 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:59:47,099 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:59:47,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:59:47,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:59:47,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:59:47,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:59:47,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:59:47,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:59:47,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:59:47,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:59:47,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:59:47,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:59:47,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:59:47,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:59:47,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:59:47,304 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:59:47,304 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:59:47,304 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:59:47,305 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:59:47,305 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:59:47,306 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:59:47,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-22 02:59:47,315] [main] java.version = 11.0.16 [testng] 02:59:47,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:59:47,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:47,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-22_02-59-47.log] [testng] 02:59:47,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-22 02:59:47,366] [main] testng.directory = /data [testng] [2024-06-22 02:59:47,366] [main] testng.configDirectory = /config [testng] [2024-06-22 02:59:47,376] [main] testng.multiplier = 1.0 [testng] [2024-06-22 02:59:47,378] [main] testng.in-memory = false [testng] [2024-06-22 02:59:47,378] [main] testng.allow-missing = false [testng] [2024-06-22 02:59:47,378] [main] user.language = en [testng] [2024-06-22 02:59:47,378] [main] user.country = ${user.country} [testng] [2024-06-22 02:59:47,378] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-22 03:07:12,394] [main] ---------------------------------------- [testng] [2024-06-22 03:07:12,394] [main] Total files: 7329 [testng] [2024-06-22 03:07:12,395] [main] Scan time: 445.016 s (60 ms/file) [testng] [2024-06-22 03:07:12,395] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-22 03:10:03,148] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 03:10:03,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:10:03,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:03,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-22_03-10-03.log] [testng] 03:10:03,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d5392d6 - End of configuration. [testng] [2024-06-22 03:10:03,297] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-22 03:10:03,304] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 03:10:03,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:10:03,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:03,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-22_03-10-03.log] [testng] 03:10:03,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f5d61d - End of configuration. [testng] [2024-06-22 03:10:03,969] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 03:10:03,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:10:03,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:03,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-22_03-10-03.log] [testng] 03:10:03,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f0d9398 - End of configuration. [testng] [2024-06-22 03:10:04,061] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 03:10:04,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:10:04,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-22_03-10-04.log] [testng] 03:10:04,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1abafcfd - End of configuration. [testng] [2024-06-22 03:10:04,138] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 03:10:04,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:10:04,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-22_03-10-04.log] [testng] 03:10:04,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da1485c - End of configuration. [testng] [2024-06-22 03:10:04,214] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-22 03:10:04,217] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 03:10:04,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:10:04,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-22_03-10-04.log] [testng] 03:10:04,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa7c754 - End of configuration. [testng] [2024-06-22 03:10:04,285] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 03:10:04,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:10:04,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-22_03-10-04.log] [testng] 03:10:04,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671096e5 - End of configuration. [testng] [2024-06-22 03:10:04,316] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 03:10:04,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:10:04,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-22_03-10-04.log] [testng] 03:10:04,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf5ad70 - End of configuration. [testng] [2024-06-22 03:10:04,385] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 03:10:04,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:10:04,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-22_03-10-04.log] [testng] 03:10:04,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb71f56 - End of configuration. [testng] [2024-06-22 03:10:04,461] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-22 03:10:04,464] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 03:10:04,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:10:04,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-22_03-10-04.log] [testng] 03:10:04,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3d11f - End of configuration. [testng] [2024-06-22 03:10:04,627] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 03:10:04,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:10:04,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-22_03-10-04.log] [testng] 03:10:04,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@457e0a18 - End of configuration. [testng] [2024-06-22 03:10:04,697] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 03:10:04,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:10:04,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:10:04,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-22_03-10-04.log] [testng] 03:10:04,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c49b7 - End of configuration. [testng] [2024-06-22 03:10:06,801] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-22 03:10:07,572] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-22 03:10:07,674] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-22 03:10:07,747] [pool-1-thread-3] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-22 03:10:07,929] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-22 03:10:08,177] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-22 03:10:08,481] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-22 03:10:08,593] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-22 03:10:08,957] [pool-1-thread-3] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-22 03:10:09,480] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-22 03:10:09,804] [pool-1-thread-7] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-22 03:10:09,967] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-22 03:10:10,248] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-06-22 03:10:10,408] [pool-1-thread-10] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-22 03:10:10,613] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-22 03:10:10,628] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-22 03:10:10,630] [pool-1-thread-9] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-22 03:10:11,514] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-22 03:10:11,573] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-22 03:10:11,706] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-22 03:10:11,862] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-22 03:10:11,953] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-22 03:10:12,030] [pool-1-thread-7] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-22 03:10:12,379] [pool-1-thread-8] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-22 03:10:12,561] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-22 03:10:15,034] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-22 03:10:15,158] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-22 03:10:15,521] [pool-1-thread-10] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-22 03:10:15,642] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2024-06-22 03:10:16,171] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-22 03:10:16,389] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-22 03:10:16,642] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-22 03:10:16,855] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-22 03:10:17,047] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-22 03:10:17,901] [pool-1-thread-1] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-22 03:10:18,199] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2024-06-22 03:10:18,568] [pool-1-thread-4] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-22 03:10:18,642] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:10:18,741] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-22 03:10:18,854] [pool-1-thread-8] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-22 03:10:21,826] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-22 03:10:21,930] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-06-22 03:10:21,968] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-22 03:10:22,477] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-22 03:10:22,583] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:10:22,701] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-22 03:10:23,388] [pool-1-thread-5] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-22 03:10:23,474] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-22 03:10:24,188] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-22 03:10:24,661] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-22 03:10:25,003] [pool-1-thread-3] Initializing 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[pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-22 03:10:29,037] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-22 03:10:29,468] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-22 03:10:29,643] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:10:30,556] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-22 03:10:30,643] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-22 03:10:31,329] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-22 03:10:33,794] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-22 03:10:34,507] [pool-1-thread-11] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-22 03:10:34,638] 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-06-22 03:10:35,032] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-06-22 03:10:35,544] [pool-1-thread-12] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-06-22 03:10:35,623] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-06-22 03:10:35,706] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-22 03:10:35,934] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-06-22 03:10:36,112] [pool-1-thread-3] Initializing /data/samples/10xcalib.stk: [testng] [2024-06-22 03:10:36,348] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-22 03:10:36,828] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-22 03:10:37,524] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-22 03:10:39,412] [pool-1-thread-3] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-22 03:10:40,966] [pool-1-thread-10] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-22 03:10:41,477] [pool-1-thread-4] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-22 03:10:41,559] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-22 03:10:41,667] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-22 03:10:41,791] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-22 03:10:41,943] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-22 03:10:42,560] [pool-1-thread-1] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-22 03:10:42,841] [pool-1-thread-2] Initializing 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03:10:57,833] [pool-1-thread-9] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-22 03:10:58,994] [pool-1-thread-6] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-22 03:10:59,091] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-22 03:10:59,127] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:10:59,673] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-22 03:10:59,736] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-22 03:11:00,911] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-22 03:11:01,041] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-22 03:11:01,625] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-22 03:11:01,745] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-22 03:11:02,129] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-22 03:11:02,356] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-22 03:11:02,429] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-22 03:11:02,647] [pool-1-thread-9] Initializing /data/jerome/deconv.STK: [testng] [2024-06-22 03:11:03,137] [pool-1-thread-12] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-22 03:11:03,832] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-22 03:11:04,157] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:04,253] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:04,344] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-06-22 03:11:04,428] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-22 03:11:06,079] [pool-1-thread-1] Initializing /data/josh/2101to800.stk: [testng] [2024-06-22 03:11:06,788] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-06-22 03:11:07,008] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-06-22 03:11:07,172] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-06-22 03:11:07,805] [pool-1-thread-12] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-06-22 03:11:08,361] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:08,561] [pool-1-thread-10] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-22 03:11:09,457] [pool-1-thread-12] Initializing /data/thomas/test.tif: [testng] [2024-06-22 03:11:09,743] [pool-1-thread-3] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-22 03:11:09,867] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-22 03:11:10,723] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-22 03:11:11,120] [pool-1-thread-3] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-06-22 03:11:11,360] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-22 03:11:11,440] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-22 03:11:11,534] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-22 03:11:14,348] [pool-1-thread-6] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-06-22 03:11:14,513] [pool-1-thread-1] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-22 03:11:14,887] [pool-1-thread-3] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-22 03:11:15,651] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-22 03:11:16,361] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-22 03:11:16,422] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-22 03:11:16,877] [pool-1-thread-2] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-22 03:11:18,297] [pool-1-thread-11] Initializing 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03:11:21,528] [pool-1-thread-11] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-22 03:11:21,617] [pool-1-thread-9] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-22 03:11:22,413] [pool-1-thread-11] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-22 03:11:22,495] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:22,726] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-22 03:11:23,140] [pool-1-thread-11] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-22 03:11:23,438] [pool-1-thread-3] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-22 03:11:23,756] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-22 03:11:23,830] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-22 03:11:23,907] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-22 03:11:23,936] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-22 03:11:23,969] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-22 03:11:24,157] [pool-1-thread-3] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-22 03:11:24,565] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-22 03:11:24,892] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-22 03:11:25,069] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-22 03:11:25,792] [pool-1-thread-11] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-22 03:11:32,216] [pool-1-thread-1] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-22 03:11:32,278] [pool-1-thread-7] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-22 03:11:32,824] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-22 03:11:33,134] [pool-1-thread-6] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-22 03:11:33,257] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-22 03:11:33,329] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-22 03:11:33,563] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-22 03:11:34,173] [pool-1-thread-10] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-22 03:11:34,429] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-22 03:11:34,588] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-22 03:11:35,411] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-22 03:11:35,908] [pool-1-thread-1] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-22 03:11:35,970] [pool-1-thread-7] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-22 03:11:36,343] [pool-1-thread-9] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-22 03:11:37,025] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-22 03:11:37,405] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-22 03:11:37,472] [pool-1-thread-12] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-22 03:11:38,028] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-22 03:11:38,448] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-22 03:11:38,513] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-22 03:11:38,524] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-22 03:11:38,974] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-22 03:11:39,169] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-22 03:11:40,696] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-22 03:11:40,775] [pool-1-thread-10] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-22 03:11:42,103] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-22 03:11:42,162] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-22 03:11:42,215] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-22 03:11:42,514] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-22 03:11:42,589] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-22 03:11:42,697] [pool-1-thread-5] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-22 03:11:43,239] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-22 03:11:43,835] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:44,045] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-22 03:11:45,642] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-22 03:11:45,701] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-22 03:11:46,162] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-22 03:11:46,540] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:46,797] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-22 03:11:47,025] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-22 03:11:47,111] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-22 03:11:48,575] [pool-1-thread-9] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-22 03:11:48,954] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-22 03:11:49,297] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-22 03:11:49,464] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-22 03:11:49,538] [pool-1-thread-5] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 0 seconds Finished: SUCCESS