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Started by upstream project "BIOFORMATS-test-repo" build number 102 originally caused by: Started by upstream project "Trigger" build number 113 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5563984106944615435.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_15802_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:57:37,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:57:37,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:57:37,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:37,681 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:57:37,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:57:37,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:57:37,681 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:57:37,681 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:37,682 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:57:37,682 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:57:37,682 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:57:37,682 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:57:37,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:57:37,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:57:37,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:57:37,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:57:37,954 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:57:37,955 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:57:37,955 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:57:37,955 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:57:37,955 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:57:37,956 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:57:37,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-24 01:57:37,966] [main] java.version = 1.8.0_342 [testng] 01:57:37,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:57:37,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:38,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-24_01-57-37.log] [testng] 01:57:38,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-24 01:57:38,020] [main] testng.directory = /data [testng] [2024-06-24 01:57:38,020] [main] testng.configDirectory = /config [testng] [2024-06-24 01:57:38,034] [main] testng.multiplier = 1.0 [testng] [2024-06-24 01:57:38,034] [main] testng.in-memory = false [testng] [2024-06-24 01:57:38,034] [main] testng.allow-missing = false [testng] [2024-06-24 01:57:38,034] [main] user.language = fr [testng] [2024-06-24 01:57:38,034] [main] user.country = FR [testng] [2024-06-24 01:57:38,034] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-24 02:03:52,077] [main] ---------------------------------------- [testng] [2024-06-24 02:03:52,078] [main] Total files: 7329 [testng] [2024-06-24 02:03:52,078] [main] Scan time: 374.043 s (51 ms/file) [testng] [2024-06-24 02:03:52,078] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-24 02:06:47,173] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:06:47,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:47,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-24_02-06-47.log] [testng] 02:06:47,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a06ac2c - End of configuration. [testng] [2024-06-24 02:06:47,229] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:06:47,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:47,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-24_02-06-47.log] [testng] 02:06:47,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7d9a54 - End of configuration. [testng] [2024-06-24 02:06:47,255] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:06:47,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:47,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-24_02-06-47.log] [testng] 02:06:47,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4763aa47 - End of configuration. [testng] [2024-06-24 02:06:47,273] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:06:47,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:47,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-24_02-06-47.log] [testng] 02:06:47,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@97c582e - End of configuration. [testng] [2024-06-24 02:06:47,329] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:06:47,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:47,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-24_02-06-47.log] [testng] 02:06:47,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bea3f20 - End of configuration. [testng] [2024-06-24 02:06:47,396] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:06:47,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:47,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-24_02-06-47.log] [testng] 02:06:47,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77e6b227 - End of configuration. [testng] [2024-06-24 02:06:47,426] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:06:47,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:47,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-24_02-06-47.log] [testng] 02:06:47,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ff04bf - End of configuration. [testng] [2024-06-24 02:06:47,523] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:06:47,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:47,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-24_02-06-47.log] [testng] 02:06:47,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cd04a7b - End of configuration. [testng] [2024-06-24 02:06:47,609] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:06:47,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:47,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-24_02-06-47.log] [testng] 02:06:47,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c49b6ff - End of configuration. [testng] [2024-06-24 02:06:47,676] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:06:47,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:47,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-24_02-06-47.log] [testng] 02:06:47,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d28044c - End of configuration. [testng] [2024-06-24 02:06:47,715] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:06:47,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:47,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:47,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-24_02-06-47.log] [testng] 02:06:47,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b950d7c - End of configuration. [testng] [2024-06-24 02:06:48,306] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:06:48,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:48,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:48,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-24_02-06-48.log] [testng] 02:06:48,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65188232 - End of configuration. [testng] [2024-06-24 02:06:50,062] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-24 02:06:52,044] [pool-1-thread-12] Initializing /data/josh/2101to600astk.stk: [testng] [2024-06-24 02:07:00,445] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:00,753] [pool-1-thread-11] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-06-24 02:07:00,842] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-24 02:07:00,923] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:01,138] [pool-1-thread-2] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-24 02:07:01,202] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:01,272] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-24 02:07:01,599] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-24 02:07:02,014] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-24 02:07:02,416] [pool-1-thread-1] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-24 02:07:03,257] [pool-1-thread-10] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-24 02:07:03,372] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-24 02:07:03,753] [pool-1-thread-2] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-24 02:07:03,790] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-24 02:07:03,841] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-06-24 02:07:03,896] [pool-1-thread-10] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-24 02:07:04,090] [pool-1-thread-11] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-24 02:07:04,318] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-24 02:07:04,382] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-24 02:07:04,534] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-24 02:07:04,588] [pool-1-thread-4] Used files list does not include base file [testng] [2024-06-24 02:07:04,717] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-24 02:07:04,770] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-24 02:07:04,793] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-24 02:07:05,002] [pool-1-thread-7] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-24 02:07:05,357] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-06-24 02:07:05,405] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:05,454] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-06-24 02:07:05,501] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-24 02:07:05,503] [pool-1-thread-9] Initializing /data/thomas/test.tif: [testng] [2024-06-24 02:07:05,946] [pool-1-thread-2] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-06-24 02:07:06,227] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-06-24 02:07:06,281] [pool-1-thread-6] Used files list does not include base file [testng] [2024-06-24 02:07:06,291] [pool-1-thread-9] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-24 02:07:06,585] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-24 02:07:06,894] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:07,029] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-06-24 02:07:07,584] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-24 02:07:07,609] [pool-1-thread-3] Used files list does not include base file [testng] [2024-06-24 02:07:07,651] [pool-1-thread-10] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-24 02:07:09,254] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-24 02:07:09,335] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-24 02:07:09,478] [pool-1-thread-4] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-24 02:07:09,614] [pool-1-thread-3] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-24 02:07:10,125] [pool-1-thread-5] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-24 02:07:10,774] [pool-1-thread-4] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-24 02:07:11,148] [pool-1-thread-7] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-24 02:07:11,281] [pool-1-thread-4] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-24 02:07:11,484] [pool-1-thread-3] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-24 02:07:14,460] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-24 02:07:14,558] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-24 02:07:15,451] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-24 02:07:16,687] [pool-1-thread-7] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-24 02:07:17,131] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:17,206] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-24 02:07:17,512] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-24 02:07:18,285] [pool-1-thread-6] Initializing /data/dave/Z Series.stk: [testng] [2024-06-24 02:07:18,886] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-24 02:07:19,254] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-24 02:07:19,924] [pool-1-thread-5] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-06-24 02:07:20,027] [pool-1-thread-9] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-24 02:07:20,169] [pool-1-thread-8] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-24 02:07:21,044] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-24 02:07:21,330] [pool-1-thread-9] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-24 02:07:21,397] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-24 02:07:22,038] [pool-1-thread-9] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-06-24 02:07:25,972] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-24 02:07:26,041] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-24 02:07:26,081] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:26,333] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:26,553] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-24 02:07:27,353] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-06-24 02:07:27,452] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-24 02:07:27,861] [pool-1-thread-9] Initializing 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[pool-1-thread-10] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-24 02:07:34,996] [pool-1-thread-8] Initializing /data/grant/X.STK: [testng] [2024-06-24 02:07:35,501] [pool-1-thread-3] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-24 02:07:35,687] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-24 02:07:35,837] [pool-1-thread-5] Initializing /data/samples/10xcalib.tif: [testng] [2024-06-24 02:07:36,347] [pool-1-thread-5] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-24 02:07:36,458] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-06-24 02:07:37,130] [pool-1-thread-8] Initializing /data/samples/diatoms3d.stk: [testng] [2024-06-24 02:07:37,232] [pool-1-thread-10] Initializing /data/david/tl4.tif: [testng] [2024-06-24 02:07:37,974] [pool-1-thread-1] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-24 02:07:38,230] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-24 02:07:38,307] [pool-1-thread-5] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-24 02:07:38,600] [pool-1-thread-3] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-24 02:07:39,109] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-24 02:07:39,613] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-24 02:07:39,904] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-24 02:07:39,979] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:40,362] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-24 02:07:40,856] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-24 02:07:41,339] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:07:41,708] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-24 02:07:42,060] [pool-1-thread-5] Initializing /data/ascb/golgi marker.tif: [testng] [2024-06-24 02:07:42,125] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-24 02:07:42,902] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-24 02:07:43,038] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-06-24 02:07:43,106] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-24 02:07:43,375] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-06-24 02:07:44,081] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-24 02:07:44,235] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-06-24 02:07:44,828] [pool-1-thread-5] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-06-24 02:07:44,870] [pool-1-thread-3] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-24 02:07:45,108] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-24 02:07:45,158] [pool-1-thread-2] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-24 02:07:45,854] [pool-1-thread-10] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-24 02:07:46,092] [pool-1-thread-9] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-24 02:07:46,174] [pool-1-thread-2] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-06-24 02:08:01,337] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:08:01,395] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-24 02:08:03,394] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-24 02:08:03,598] [pool-1-thread-12] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-24 02:08:04,927] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-24 02:08:05,042] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-24 02:08:05,501] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-24 02:08:05,575] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-24 02:08:05,845] [pool-1-thread-1] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-24 02:08:06,063] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-06-24 02:08:06,193] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-24 02:08:06,256] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-24 02:08:06,646] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-24 02:08:06,857] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-24 02:08:07,501] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-24 02:08:07,553] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-24 02:08:08,399] [pool-1-thread-5] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-24 02:08:09,592] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-24 02:08:09,638] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-24 02:08:09,667] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-24 02:08:09,739] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-24 02:08:10,255] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-24 02:08:10,335] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-24 02:08:10,725] [pool-1-thread-2] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-24 02:08:11,454] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-24 02:08:12,093] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-06-24 02:08:12,638] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-24 02:08:13,036] [pool-1-thread-1] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-24 02:08:13,764] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-24 02:08:13,842] [pool-1-thread-12] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-24 02:08:14,219] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-24 02:08:14,946] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-24 02:08:14,995] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-06-24 02:08:15,044] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-24 02:08:15,053] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-24 02:08:15,171] [pool-1-thread-9] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-24 02:08:16,069] [pool-1-thread-12] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-24 02:08:17,363] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-24 02:08:17,916] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-24 02:08:18,127] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-06-24 02:08:18,613] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-24 02:08:18,683] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-24 02:08:19,132] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-24 02:08:19,509] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-06-24 02:08:19,822] [pool-1-thread-2] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-24 02:08:20,078] [pool-1-thread-6] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-24 02:08:20,430] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-06-24 02:08:20,504] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-24 02:08:20,559] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-24 02:08:21,246] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-24 02:08:21,481] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-24 02:08:21,686] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:08:22,184] [pool-1-thread-1] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-06-24 02:08:23,056] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-24 02:08:24,044] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-06-24 02:08:24,934] [pool-1-thread-2] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-24 02:08:25,112] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:08:25,248] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-24 02:08:25,540] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-24 02:08:25,602] [pool-1-thread-6] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-24 02:08:26,017] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-24 02:08:26,300] [pool-1-thread-6] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-24 02:08:26,423] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-24 02:08:26,748] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-24 02:08:26,808] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-24 02:08:26,985] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-24 02:08:27,053] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-24 02:08:27,541] [pool-1-thread-10] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-24 02:08:27,589] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-24 02:08:27,613] [pool-1-thread-1] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 19 seconds Finished: SUCCESS