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Started by upstream project "BIOFORMATS-test-repo" build number 102 originally caused by: Started by upstream project "Trigger" build number 113 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10070437621460102790.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_15851_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:35:40,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:35:40,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:35:40,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:35:40,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:35:40,448 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:35:40,448 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:35:40,448 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:35:40,449 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:35:40,449 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:35:40,464 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:35:40,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 635 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-24 02:35:40,476] [main] java.version = 1.8.0_342 [testng] 02:35:40,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:35:40,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:40,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-24_02-35-40.log] [testng] 02:35:40,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-24 02:35:40,885] [main] testng.directory = /data [testng] [2024-06-24 02:35:40,885] [main] testng.configDirectory = /config [testng] [2024-06-24 02:35:40,981] [main] testng.multiplier = 1.0 [testng] [2024-06-24 02:35:40,982] [main] testng.in-memory = false [testng] [2024-06-24 02:35:40,982] [main] testng.allow-missing = false [testng] [2024-06-24 02:35:40,982] [main] user.language = fr [testng] [2024-06-24 02:35:40,982] [main] user.country = FR [testng] [2024-06-24 02:35:40,982] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-24 02:35:42,480] [main] ---------------------------------------- [testng] [2024-06-24 02:35:42,480] [main] Total files: 32 [testng] [2024-06-24 02:35:42,480] [main] Scan time: 1.498 s (46 ms/file) [testng] [2024-06-24 02:35:42,480] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-24 02:35:46,401] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 02:35:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:35:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-24_02-35-46.log] [testng] 02:35:46,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2973e0 - End of configuration. [testng] [2024-06-24 02:35:46,459] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 02:35:46,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:35:46,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-24_02-35-46.log] [testng] 02:35:46,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa6af1 - End of configuration. [testng] [2024-06-24 02:35:46,523] [pool-1-thread-11] Initializing /data/qa-29459/bad.jpg: [testng] 02:35:46,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:35:46,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-24_02-35-46.log] [testng] 02:35:46,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43bb5051 - End of configuration. [testng] [2024-06-24 02:35:46,539] [pool-1-thread-10] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:35:46,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:35:46,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-24_02-35-46.log] [testng] 02:35:46,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@747b2c9 - End of configuration. [testng] [2024-06-24 02:35:46,562] [pool-1-thread-9] Initializing /data/samples/Criterion.1sc: [testng] 02:35:46,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:35:46,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-24_02-35-46.log] [testng] 02:35:46,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632a0ad9 - End of configuration. [testng] [2024-06-24 02:35:46,589] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg: [testng] 02:35:46,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:35:46,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-24_02-35-46.log] [testng] 02:35:46,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54df49e8 - End of configuration. [testng] [2024-06-24 02:35:46,639] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] 02:35:46,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:35:46,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-24_02-35-46.log] [testng] 02:35:46,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c4ccb36 - End of configuration. [testng] [2024-06-24 02:35:46,672] [pool-1-thread-6] Initializing /data/qa-29469/bad2.1sc: [testng] 02:35:46,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:35:46,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-24_02-35-46.log] [testng] 02:35:46,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46bee485 - End of configuration. [testng] [2024-06-24 02:35:46,708] [pool-1-thread-5] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:35:46,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:35:46,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-24_02-35-46.log] [testng] 02:35:46,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57eb7556 - End of configuration. [testng] [2024-06-24 02:35:46,745] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 02:35:46,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:35:46,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-24_02-35-46.log] [testng] 02:35:46,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d0e060b - End of configuration. [testng] [2024-06-24 02:35:46,769] [pool-1-thread-3] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 02:35:46,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:35:46,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-24_02-35-46.log] [testng] 02:35:46,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82bf8a8 - End of configuration. [testng] [2024-06-24 02:35:46,788] [pool-1-thread-2] Initializing /data/adrian/test_img.1sc: [testng] 02:35:46,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:35:46,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:46,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-24_02-35-46.log] [testng] 02:35:46,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cc1bfe8 - End of configuration. [testng] [2024-06-24 02:35:49,295] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-06-24 02:35:49,340] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-06-24 02:35:49,382] [pool-1-thread-10] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-06-24 02:35:49,398] [pool-1-thread-3] Initializing /data/geert/good example1.1sc: [testng] [2024-06-24 02:35:49,447] [pool-1-thread-6] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-06-24 02:35:49,480] [pool-1-thread-8] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-06-24 02:35:49,489] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-06-24 02:35:49,507] [pool-1-thread-4] Initializing /data/samples/imagesEight.1sc: [testng] [2024-06-24 02:35:49,520] [pool-1-thread-1] Initializing /data/qa-29459/bad.1sc: [testng] [2024-06-24 02:35:49,555] [pool-1-thread-7] Initializing /data/geert/bad example1.jpg: [testng] [2024-06-24 02:35:49,594] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-06-24 02:35:49,634] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-06-24 02:35:50,037] [pool-1-thread-8] Initializing /data/keith/test.1sc: [testng] [2024-06-24 02:35:50,451] [pool-1-thread-4] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-06-24 02:35:50,464] [pool-1-thread-8] Initializing /data/keith/test2.1sc: [testng] [2024-06-24 02:35:50,495] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-06-24 02:35:50,606] [pool-1-thread-10] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-06-24 02:35:50,751] [pool-1-thread-9] Initializing /data/qa-29469/good.1sc: [testng] [2024-06-24 02:35:50,889] [pool-1-thread-12] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-06-24 02:35:50,919] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS