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Started by upstream project "BIOFORMATS-test-repo" build number 103 originally caused by: Started by upstream project "Trigger" build number 114 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5671285381398812193.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_15882_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:20:28,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:28,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:20:28,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:28,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:28,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:28,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:28,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:28,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:28,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:28,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:28,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:28,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:28,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:28,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:28,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:28,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:28,635 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:28,635 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:28,635 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:28,636 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:28,636 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:20:28,637 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:20:28,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-25 01:20:28,645] [main] java.version = 11.0.16 [testng] 01:20:28,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:28,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:28,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-25_01-20-28.log] [testng] 01:20:28,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-25 01:20:28,691] [main] testng.directory = /data [testng] [2024-06-25 01:20:28,692] [main] testng.configDirectory = /config [testng] [2024-06-25 01:20:28,701] [main] testng.multiplier = 1.0 [testng] [2024-06-25 01:20:28,702] [main] testng.in-memory = false [testng] [2024-06-25 01:20:28,702] [main] testng.allow-missing = false [testng] [2024-06-25 01:20:28,702] [main] user.language = en [testng] [2024-06-25 01:20:28,702] [main] user.country = ${user.country} [testng] [2024-06-25 01:20:28,703] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-25 01:20:29,126] [main] ---------------------------------------- [testng] [2024-06-25 01:20:29,126] [main] Total files: 36 [testng] [2024-06-25 01:20:29,126] [main] Scan time: 0.423 s (11 ms/file) [testng] [2024-06-25 01:20:29,127] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-25 01:20:30,374] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:20:30,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:30,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-25_01-20-30.log] [testng] 01:20:30,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7247dbeb - End of configuration. [testng] [2024-06-25 01:20:30,437] [pool-1-thread-12] Initializing /data/generated/mri-stack8.pcx: [testng] 01:20:30,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:30,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-25_01-20-30.log] [testng] 01:20:30,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32aacb77 - End of configuration. [testng] [2024-06-25 01:20:30,444] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx: [testng] 01:20:30,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:30,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-25_01-20-30.log] [testng] 01:20:30,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc348d1 - End of configuration. [testng] [2024-06-25 01:20:30,452] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 01:20:30,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:30,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-25_01-20-30.log] [testng] 01:20:30,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dcbb3c9 - End of configuration. [testng] [2024-06-25 01:20:30,464] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:20:30,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:30,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-25_01-20-30.log] [testng] 01:20:30,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f780db - End of configuration. [testng] [2024-06-25 01:20:30,471] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:20:30,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:30,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-25_01-20-30.log] [testng] 01:20:30,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fcfb92f - End of configuration. [testng] [2024-06-25 01:20:30,479] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] 01:20:30,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:30,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-25_01-20-30.log] [testng] 01:20:30,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bd1e5b7 - End of configuration. [testng] [2024-06-25 01:20:30,486] [pool-1-thread-6] Initializing /data/generated/mri-stack7.pcx: [testng] 01:20:30,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:30,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-25_01-20-30.log] [testng] 01:20:30,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5105eb60 - End of configuration. [testng] [2024-06-25 01:20:30,492] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] 01:20:30,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:30,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-25_01-20-30.log] [testng] 01:20:30,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50302d11 - End of configuration. [testng] [2024-06-25 01:20:30,499] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 01:20:30,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:30,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-25_01-20-30.log] [testng] 01:20:30,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c05358e - End of configuration. [testng] [2024-06-25 01:20:30,520] [pool-1-thread-3] Initializing /data/generated/mri-stack21.pcx: [testng] 01:20:30,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:30,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-25_01-20-30.log] [testng] 01:20:30,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration. [testng] [2024-06-25 01:20:30,529] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx: [testng] 01:20:30,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:30,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:30,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-25_01-20-30.log] [testng] 01:20:30,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a3f62a - End of configuration. [testng] [2024-06-25 01:20:32,476] [pool-1-thread-9] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-06-25 01:20:32,480] [pool-1-thread-3] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-06-25 01:20:32,484] [pool-1-thread-12] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-06-25 01:20:32,488] [pool-1-thread-2] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-06-25 01:20:32,491] [pool-1-thread-6] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-06-25 01:20:32,495] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-06-25 01:20:32,498] [pool-1-thread-5] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-06-25 01:20:32,502] [pool-1-thread-11] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-06-25 01:20:32,505] [pool-1-thread-1] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-06-25 01:20:32,508] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-06-25 01:20:32,511] [pool-1-thread-8] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-06-25 01:20:32,515] [pool-1-thread-4] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-06-25 01:20:32,780] [pool-1-thread-5] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-06-25 01:20:32,788] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-06-25 01:20:32,792] [pool-1-thread-3] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-06-25 01:20:32,845] [pool-1-thread-8] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-06-25 01:20:32,849] [pool-1-thread-11] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-06-25 01:20:32,854] [pool-1-thread-9] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-06-25 01:20:32,857] [pool-1-thread-7] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-06-25 01:20:32,907] [pool-1-thread-10] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-06-25 01:20:32,913] [pool-1-thread-4] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-06-25 01:20:32,916] [pool-1-thread-2] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-06-25 01:20:32,922] [pool-1-thread-6] Initializing /data/generated/mri-stack15.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS