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Started by upstream project "BIOFORMATS-test-repo" build number 103 originally caused by: Started by upstream project "Trigger" build number 114 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4443202516040788381.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16039_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:43:58,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:43:58,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:43:58,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:43:58,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:43:58,236 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:43:58,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:43:58,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:43:58,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:43:58,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:43:58,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:43:58,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:43:58,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:43:58,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:43:58,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:43:58,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:43:58,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:43:58,478 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:43:58,478 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:43:58,478 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:43:58,479 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:43:58,479 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:43:58,480 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:43:58,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-25 02:43:58,490] [main] java.version = 11.0.16 [testng] 02:43:58,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:43:58,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:43:58,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-25_02-43-58.log] [testng] 02:43:58,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-25 02:43:58,546] [main] testng.directory = /data [testng] [2024-06-25 02:43:58,546] [main] testng.configDirectory = /config [testng] [2024-06-25 02:43:58,556] [main] testng.multiplier = 1.0 [testng] [2024-06-25 02:43:58,558] [main] testng.in-memory = false [testng] [2024-06-25 02:43:58,558] [main] testng.allow-missing = false [testng] [2024-06-25 02:43:58,558] [main] user.language = en [testng] [2024-06-25 02:43:58,558] [main] user.country = ${user.country} [testng] [2024-06-25 02:43:58,558] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-25 02:43:59,659] [main] ---------------------------------------- [testng] [2024-06-25 02:43:59,659] [main] Total files: 22 [testng] [2024-06-25 02:43:59,659] [main] Scan time: 1.101 s (50 ms/file) [testng] [2024-06-25 02:43:59,659] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-25 02:44:07,950] [pool-1-thread-1] Initializing /data/xiuwen/head2.seq: [testng] 02:44:07,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:44:07,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:07,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-25_02-44-07.log] [testng] 02:44:07,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7acab7cf - End of configuration. [testng] [2024-06-25 02:44:08,099] [pool-1-thread-12] Initializing /data/converted/dub01.pic: [testng] 02:44:08,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:44:08,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-25_02-44-08.log] [testng] 02:44:08,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23e587c6 - End of configuration. [testng] [2024-06-25 02:44:08,163] [pool-1-thread-11] Initializing /data/converted/clown.tif: [testng] 02:44:08,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:44:08,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-25_02-44-08.log] [testng] 02:44:08,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5517552 - End of configuration. [testng] [2024-06-25 02:44:08,190] [pool-1-thread-10] Initializing /data/samples/PROBE.TIF: [testng] 02:44:08,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:44:08,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-25_02-44-08.log] [testng] 02:44:08,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71844ebc - End of configuration. [testng] [2024-06-25 02:44:08,222] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw: [testng] 02:44:08,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:44:08,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-25_02-44-08.log] [testng] 02:44:08,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@307e8780 - End of configuration. [testng] [2024-06-25 02:44:08,322] [pool-1-thread-8] Initializing /data/converted/clown8c.tif: [testng] 02:44:08,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:44:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-25_02-44-08.log] [testng] 02:44:08,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38404d94 - End of configuration. [testng] [2024-06-25 02:44:08,362] [pool-1-thread-7] Initializing /data/converted/mitosis-test.tif: [testng] 02:44:08,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:44:08,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-25_02-44-08.log] [testng] 02:44:08,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b923de7 - End of configuration. [testng] [2024-06-25 02:44:08,581] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips: [testng] 02:44:08,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:44:08,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-25_02-44-08.log] [testng] 02:44:08,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@634d40f2 - End of configuration. [testng] [2024-06-25 02:44:08,596] [pool-1-thread-5] Initializing /data/converted/dub01.ipw: [testng] 02:44:08,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:44:08,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-25_02-44-08.log] [testng] 02:44:08,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@726f83b7 - End of configuration. [testng] [2024-06-25 02:44:08,645] [pool-1-thread-4] Initializing /data/converted/clown.seq: [testng] 02:44:08,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:44:08,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-25_02-44-08.log] [testng] 02:44:08,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b68fdf1 - End of configuration. [testng] [2024-06-25 02:44:08,669] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:44:08,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:44:08,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-25_02-44-08.log] [testng] 02:44:08,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2013c5ea - End of configuration. [testng] [2024-06-25 02:44:08,715] [pool-1-thread-2] Initializing /data/converted/clown.ipw: [testng] 02:44:08,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:44:08,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-25_02-44-08.log] [testng] 02:44:08,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b196d81 - End of configuration. [testng] [2024-06-25 02:44:11,673] [pool-1-thread-11] Initializing /data/converted/mitosis-test.seq: [testng] [2024-06-25 02:44:11,706] [pool-1-thread-4] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-06-25 02:44:11,743] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-06-25 02:44:11,815] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ: [testng] [2024-06-25 02:44:11,837] [pool-1-thread-9] Initializing /data/converted/clown8c.seq: [testng] [2024-06-25 02:44:11,853] [pool-1-thread-8] Initializing /data/converted/dub01.seq: [testng] [2024-06-25 02:44:11,884] [pool-1-thread-12] Initializing /data/converted/clown8c.ipw: [testng] [2024-06-25 02:44:11,901] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] [2024-06-25 02:44:11,928] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS