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Started by upstream project "BIOFORMATS-test-repo" build number 104 originally caused by: Started by upstream project "Trigger" build number 116 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12456966324491273049.sh + '[' psd = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16178_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:25:28,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:25:28,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:25:28,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:28,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:28,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:25:28,602 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:25:28,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:25:28,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:28,605 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:28,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:25:28,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:25:28,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:25:28,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:25:28,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:25:28,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:25:28,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:25:28,926 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:25:28,926 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:25:28,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:25:28,927 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:25:28,927 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:25:28,928 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:25:28,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 323 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-27 02:25:28,940] [main] java.version = 21 [testng] 02:25:28,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:25:28,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:29,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-27_02-25-28.log] [testng] 02:25:29,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-27 02:25:29,007] [main] testng.directory = /data [testng] [2024-06-27 02:25:29,007] [main] testng.configDirectory = /config [testng] [2024-06-27 02:25:29,024] [main] testng.multiplier = 1.0 [testng] [2024-06-27 02:25:29,025] [main] testng.in-memory = false [testng] [2024-06-27 02:25:29,026] [main] testng.allow-missing = false [testng] [2024-06-27 02:25:29,026] [main] user.language = en [testng] [2024-06-27 02:25:29,026] [main] user.country = ${user.country} [testng] [2024-06-27 02:25:29,026] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-27 02:25:29,743] [main] ---------------------------------------- [testng] [2024-06-27 02:25:29,743] [main] Total files: 18 [testng] [2024-06-27 02:25:29,743] [main] Scan time: 0.717 s (39 ms/file) [testng] [2024-06-27 02:25:29,744] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-27 02:25:31,331] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:25:31,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:31,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-27_02-25-31.log] [testng] 02:25:31,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51459111 - End of configuration. [testng] [2024-06-27 02:25:31,408] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:25:31,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:31,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-27_02-25-31.log] [testng] 02:25:31,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ea15f1 - End of configuration. [testng] [2024-06-27 02:25:31,443] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:25:31,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:31,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-27_02-25-31.log] [testng] 02:25:31,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fda905 - End of configuration. [testng] [2024-06-27 02:25:31,471] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:25:31,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:31,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-27_02-25-31.log] [testng] 02:25:31,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275a3173 - End of configuration. [testng] [2024-06-27 02:25:31,523] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 02:25:31,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:31,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-27_02-25-31.log] [testng] 02:25:31,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef81a5 - End of configuration. [testng] [2024-06-27 02:25:31,622] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:25:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-27_02-25-31.log] [testng] 02:25:31,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18120a93 - End of configuration. [testng] [2024-06-27 02:25:31,715] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] 02:25:31,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:31,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-27_02-25-31.log] [testng] 02:25:31,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e20d3c9 - End of configuration. [testng] [2024-06-27 02:25:31,867] [pool-1-thread-6] Initializing /data/ascb/607x.psd: [testng] 02:25:31,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:31,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-27_02-25-31.log] [testng] 02:25:31,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ae5535 - End of configuration. [testng] [2024-06-27 02:25:31,989] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:25:31,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:31,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:31,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-27_02-25-31.log] [testng] 02:25:31,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1505972d - End of configuration. [testng] [2024-06-27 02:25:32,123] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] 02:25:32,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:32,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:32,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-27_02-25-32.log] [testng] 02:25:32,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@307674fd - End of configuration. [testng] [2024-06-27 02:25:32,195] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:25:32,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:32,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:32,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-27_02-25-32.log] [testng] 02:25:32,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd0823 - End of configuration. [testng] [2024-06-27 02:25:32,221] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] 02:25:32,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:32,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:32,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-27_02-25-32.log] [testng] 02:25:32,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a854de4 - End of configuration. [testng] [2024-06-27 02:25:37,173] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-06-27 02:25:37,192] [pool-1-thread-10] Initializing /data/cris/house.tif: [testng] [2024-06-27 02:25:37,233] [pool-1-thread-11] Initializing /data/misc/glossy_buttons.psd: [testng] [2024-06-27 02:25:37,254] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-06-27 02:25:37,287] [pool-1-thread-3] Initializing /data/misc/smilie.psd: [testng] [2024-06-27 02:25:37,889] [pool-1-thread-1] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 seconds Finished: SUCCESS