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Started by upstream project "BIOFORMATS-test-repo" build number 11 originally caused by: Started by upstream project "Trigger" build number 14 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11170169961151734974.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_1621_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:20:17,944 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:20:17,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:20:17,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:17,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:17,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:20:17,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:20:17,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:20:17,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:17,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:17,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:20:17,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:20:17,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:20:18,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:20:18,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:20:18,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:20:18,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:20:18,267 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:20:18,267 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:20:18,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:20:18,268 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:20:18,268 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:20:18,269 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:20:18,269 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 320 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-25 00:20:18,280] [main] java.version = 1.8.0_342 [testng] 00:20:18,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:20:18,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:18,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_00-20-18.log] [testng] 00:20:18,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-25 00:20:18,342] [main] testng.directory = /data [testng] [2024-03-25 00:20:18,342] [main] testng.configDirectory = /config [testng] [2024-03-25 00:20:18,355] [main] testng.multiplier = 1.0 [testng] [2024-03-25 00:20:18,355] [main] testng.in-memory = false [testng] [2024-03-25 00:20:18,355] [main] testng.allow-missing = false [testng] [2024-03-25 00:20:18,355] [main] user.language = fr [testng] [2024-03-25 00:20:18,355] [main] user.country = FR [testng] [2024-03-25 00:20:18,355] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-25 00:20:37,147] [main] ---------------------------------------- [testng] [2024-03-25 00:20:37,147] [main] Total files: 283 [testng] [2024-03-25 00:20:37,147] [main] Scan time: 18.791 s (66 ms/file) [testng] [2024-03-25 00:20:37,147] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-25 00:29:50,670] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 00:29:50,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:29:50,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:50,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_00-29-50.log] [testng] 00:29:50,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f27b71 - End of configuration. [testng] [2024-03-25 00:29:50,702] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] 00:29:50,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:29:50,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:50,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-25_00-29-50.log] [testng] 00:29:50,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c09b5ee - End of configuration. [testng] [2024-03-25 00:29:52,444] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 00:29:52,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:29:52,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:52,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-25_00-29-52.log] [testng] 00:29:52,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ddb4e29 - End of configuration. [testng] [2024-03-25 00:29:52,583] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] 00:29:52,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:29:52,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:52,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-25_00-29-52.log] [testng] 00:29:52,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39031c13 - End of configuration. [testng] [2024-03-25 00:29:54,317] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] 00:29:54,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:29:54,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:54,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_00-29-54.log] [testng] 00:29:54,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d89831c - End of configuration. [testng] [2024-03-25 00:29:54,668] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 00:29:54,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:29:54,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:54,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_00-29-54.log] [testng] 00:29:54,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e44a5fa - End of configuration. [testng] [2024-03-25 00:29:55,347] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] 00:29:55,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:29:55,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:55,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_00-29-55.log] [testng] 00:29:55,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53abe055 - End of configuration. [testng] [2024-03-25 00:29:55,742] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] 00:29:55,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:29:55,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:55,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_00-29-55.log] [testng] 00:29:55,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d59e2be - End of configuration. [testng] [2024-03-25 00:29:56,091] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] 00:29:56,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:29:56,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:56,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_00-29-56.log] [testng] 00:29:56,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c84d325 - End of configuration. [testng] [2024-03-25 00:29:58,102] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] 00:29:58,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:29:58,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:58,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_00-29-58.log] [testng] 00:29:58,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65eee1d4 - End of configuration. [testng] [2024-03-25 00:29:58,158] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] 00:29:58,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:29:58,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:58,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_00-29-58.log] [testng] 00:29:58,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46038eba - End of configuration. [testng] [2024-03-25 00:29:58,228] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] 00:29:58,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:29:58,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:58,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_00-29-58.log] [testng] 00:29:58,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146761a7 - End of configuration. [testng] [2024-03-25 00:30:02,862] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-03-25 00:30:03,064] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-03-25 00:30:04,246] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-03-25 00:30:04,313] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-03-25 00:30:04,905] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-03-25 00:30:04,971] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-03-25 00:30:05,544] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir: [testng] [2024-03-25 00:30:06,470] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-03-25 00:30:06,568] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-03-25 00:30:07,700] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-03-25 00:30:09,564] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-03-25 00:30:10,077] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-03-25 00:30:11,588] [pool-1-thread-10] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-03-25 00:30:11,789] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-03-25 00:30:11,944] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-03-25 00:30:12,229] [pool-1-thread-5] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-03-25 00:30:14,198] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-03-25 00:30:14,575] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-03-25 00:30:14,800] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-03-25 00:30:16,261] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-03-25 00:30:16,531] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-03-25 00:30:25,977] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-03-25 00:30:26,117] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-03-25 00:30:27,452] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-03-25 00:30:27,892] [pool-1-thread-9] Initializing /data/qa-17270/stack1.oir: [testng] [2024-03-25 00:30:31,908] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-03-25 00:30:32,711] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-03-25 00:30:34,726] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-03-25 00:30:48,552] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-03-25 00:30:49,415] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-03-25 00:30:49,895] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-03-25 00:30:51,251] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-03-25 00:31:02,941] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-03-25 00:31:03,375] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-03-25 00:31:03,772] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-03-25 00:31:06,468] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-03-25 00:31:06,976] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-03-25 00:31:08,366] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-03-25 00:31:08,570] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-03-25 00:31:10,135] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-03-25 00:31:10,839] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-03-25 00:31:11,627] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-03-25 00:31:11,837] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-03-25 00:31:14,320] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-03-25 00:31:26,056] [pool-1-thread-3] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-03-25 00:31:26,207] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-03-25 00:31:26,488] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-03-25 00:31:30,509] [pool-1-thread-5] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-03-25 00:31:33,566] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-03-25 00:31:33,894] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-03-25 00:31:34,824] [pool-1-thread-7] Initializing 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Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-03-25 00:36:37,750] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-03-25 00:37:24,716] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-03-25 00:37:24,815] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-03-25 00:37:25,186] [pool-1-thread-8] Initializing /data/qa-17919/f10187.oir: [testng] [2024-03-25 00:37:47,887] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-03-25 00:37:48,208] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-03-25 00:37:48,335] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-03-25 00:37:49,803] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z 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20151021_0006.oir: [testng] [2024-03-25 00:37:54,902] [pool-1-thread-9] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-03-25 00:37:58,110] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-03-25 00:37:58,917] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-03-25 00:37:59,273] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-03-25 00:38:00,111] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-03-25 00:38:01,971] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-03-25 00:38:04,696] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-03-25 00:38:04,994] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-03-25 00:38:06,989] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-03-25 00:38:08,088] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-03-25 00:38:09,038] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-03-25 00:38:09,542] [pool-1-thread-10] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-03-25 00:38:11,033] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-03-25 00:38:11,223] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-03-25 00:38:12,421] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-03-25 00:38:12,647] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-03-25 00:38:14,877] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-03-25 00:38:17,140] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-03-25 00:38:17,545] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-03-25 00:38:19,019] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-03-25 00:38:19,347] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-03-25 00:38:19,648] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-03-25 00:38:21,432] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-03-25 00:38:27,062] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-03-25 00:38:27,811] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-03-25 00:38:28,501] [pool-1-thread-5] Initializing /data/olympus/XYZt.oir: [testng] [2024-03-25 00:38:45,005] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-03-25 00:38:46,467] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-03-25 00:38:48,064] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-03-25 00:38:48,617] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-03-25 00:38:49,461] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-03-25 00:38:50,191] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-03-25 00:38:51,926] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-03-25 00:38:52,191] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-03-25 00:38:55,284] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-03-25 00:38:56,327] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-03-25 00:38:57,499] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-03-25 00:38:58,546] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-03-25 00:39:00,049] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-03-25 00:39:03,176] [pool-1-thread-10] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-03-25 00:39:04,132] [pool-1-thread-9] Initializing /data/qa-17917/f10010.oir: [testng] [2024-03-25 00:40:24,460] [pool-1-thread-2] Initializing /data/qa-17335/1.oir: [testng] [2024-03-25 00:40:26,615] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-03-25 00:40:27,207] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-03-25 00:40:30,575] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-03-25 00:40:31,175] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-03-25 00:40:37,246] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] 01:32:26,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:32:26,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:26,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_01-32-26.log] [testng] 01:32:26,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 72 minutes 12 seconds Finished: SUCCESS