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Started by upstream project "BIOFORMATS-test-repo" build number 105 originally caused by: Started by upstream project "Trigger" build number 117 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2155856109276344802.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16210_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:27:23,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:27:23,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:27:23,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:23,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:23,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:27:23,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:27:23,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:27:23,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:23,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:23,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:27:23,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:27:23,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:27:24,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:27:24,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:27:24,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:27:24,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:27:24,186 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:27:24,186 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:27:24,187 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:27:24,187 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:27:24,187 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:27:24,188 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:27:24,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-28 01:27:24,198] [main] java.version = 1.8.0_342 [testng] 01:27:24,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:27:24,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:24,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-28_01-27-24.log] [testng] 01:27:24,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-28 01:27:24,254] [main] testng.directory = /data [testng] [2024-06-28 01:27:24,254] [main] testng.configDirectory = /config [testng] [2024-06-28 01:27:24,266] [main] testng.multiplier = 1.0 [testng] [2024-06-28 01:27:24,266] [main] testng.in-memory = false [testng] [2024-06-28 01:27:24,266] [main] testng.allow-missing = false [testng] [2024-06-28 01:27:24,266] [main] user.language = en [testng] [2024-06-28 01:27:24,266] [main] user.country = ${user.country} [testng] [2024-06-28 01:27:24,266] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-28 01:27:24,759] [main] ---------------------------------------- [testng] [2024-06-28 01:27:24,759] [main] Total files: 36 [testng] [2024-06-28 01:27:24,759] [main] Scan time: 0.493 s (13 ms/file) [testng] [2024-06-28 01:27:24,759] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-28 01:27:26,109] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 01:27:26,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:26,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-28_01-27-26.log] [testng] 01:27:26,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e67c5b9 - End of configuration. [testng] [2024-06-28 01:27:26,160] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 01:27:26,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:26,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-28_01-27-26.log] [testng] 01:27:26,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d46f6a4 - End of configuration. [testng] [2024-06-28 01:27:26,167] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 01:27:26,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:26,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-28_01-27-26.log] [testng] 01:27:26,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eff42c7 - End of configuration. [testng] [2024-06-28 01:27:26,177] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 01:27:26,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:26,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-28_01-27-26.log] [testng] 01:27:26,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4092618a - End of configuration. [testng] [2024-06-28 01:27:26,183] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:27:26,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:26,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-28_01-27-26.log] [testng] 01:27:26,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a9500a - End of configuration. [testng] [2024-06-28 01:27:26,188] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 01:27:26,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:26,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-28_01-27-26.log] [testng] 01:27:26,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39f81fa4 - End of configuration. [testng] [2024-06-28 01:27:26,193] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 01:27:26,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:26,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-28_01-27-26.log] [testng] 01:27:26,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f3d9c0 - End of configuration. [testng] [2024-06-28 01:27:26,198] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 01:27:26,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:26,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-28_01-27-26.log] [testng] 01:27:26,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@450a18d5 - End of configuration. [testng] [2024-06-28 01:27:26,203] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 01:27:26,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:26,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-28_01-27-26.log] [testng] 01:27:26,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5bbb20 - End of configuration. [testng] [2024-06-28 01:27:26,208] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 01:27:26,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:26,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-28_01-27-26.log] [testng] 01:27:26,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126fdf22 - End of configuration. [testng] [2024-06-28 01:27:26,213] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 01:27:26,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:26,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-28_01-27-26.log] [testng] 01:27:26,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ed440f - End of configuration. [testng] [2024-06-28 01:27:26,218] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 01:27:26,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:26,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-28_01-27-26.log] [testng] 01:27:26,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681e74f9 - End of configuration. [testng] [2024-06-28 01:27:28,445] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-06-28 01:27:28,448] [pool-1-thread-8] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-06-28 01:27:28,451] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-06-28 01:27:28,454] [pool-1-thread-12] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-06-28 01:27:28,458] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-06-28 01:27:28,464] [pool-1-thread-1] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-06-28 01:27:28,467] [pool-1-thread-9] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-06-28 01:27:28,472] [pool-1-thread-7] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-06-28 01:27:28,477] [pool-1-thread-2] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-06-28 01:27:28,479] [pool-1-thread-10] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-06-28 01:27:28,482] [pool-1-thread-3] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-06-28 01:27:28,488] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-06-28 01:27:28,771] [pool-1-thread-5] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-06-28 01:27:28,774] [pool-1-thread-6] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-06-28 01:27:28,797] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-06-28 01:27:28,800] [pool-1-thread-2] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-06-28 01:27:28,806] [pool-1-thread-7] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-06-28 01:27:28,835] [pool-1-thread-10] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-06-28 01:27:28,838] [pool-1-thread-8] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-06-28 01:27:28,844] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-06-28 01:27:28,913] [pool-1-thread-6] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-06-28 01:27:28,918] [pool-1-thread-5] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-06-28 01:27:28,968] [pool-1-thread-12] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS