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Started by upstream project "BIOFORMATS-test-repo" build number 105 originally caused by: Started by upstream project "Trigger" build number 117 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13916184541594084478.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16234_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:30:44,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:30:44,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:30:44,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:44,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:44,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:30:44,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:30:44,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:30:44,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:44,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:44,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:30:44,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:30:44,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:30:45,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:45,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:45,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:45,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:45,137 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:45,137 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:45,138 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:30:45,139 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:30:45,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-28 01:30:45,150] [main] java.version = 1.8.0_342 [testng] 01:30:45,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:45,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:45,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-28_01-30-45.log] [testng] 01:30:45,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-28 01:30:45,213] [main] testng.directory = /data [testng] [2024-06-28 01:30:45,213] [main] testng.configDirectory = /config [testng] [2024-06-28 01:30:45,226] [main] testng.multiplier = 1.0 [testng] [2024-06-28 01:30:45,227] [main] testng.in-memory = false [testng] [2024-06-28 01:30:45,227] [main] testng.allow-missing = false [testng] [2024-06-28 01:30:45,227] [main] user.language = en [testng] [2024-06-28 01:30:45,227] [main] user.country = ${user.country} [testng] [2024-06-28 01:30:45,227] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-28 01:30:45,913] [main] ---------------------------------------- [testng] [2024-06-28 01:30:45,913] [main] Total files: 31 [testng] [2024-06-28 01:30:45,913] [main] Scan time: 0.686 s (22 ms/file) [testng] [2024-06-28 01:30:45,914] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-28 01:30:48,879] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:30:48,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:48,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:48,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-28_01-30-48.log] [testng] 01:30:48,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@641c5a0a - End of configuration. [testng] [2024-06-28 01:30:48,918] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:30:48,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:48,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:48,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-28_01-30-48.log] [testng] 01:30:48,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@251779f2 - End of configuration. [testng] [2024-06-28 01:30:48,954] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:30:48,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:48,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:48,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-28_01-30-48.log] [testng] 01:30:48,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f3aef6 - End of configuration. [testng] [2024-06-28 01:30:48,967] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:30:48,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:48,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:48,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-28_01-30-48.log] [testng] 01:30:48,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbf1f21 - End of configuration. [testng] [2024-06-28 01:30:48,983] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:30:48,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:48,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:48,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-28_01-30-48.log] [testng] 01:30:48,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d368d4a - End of configuration. [testng] [2024-06-28 01:30:49,081] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:30:49,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:49,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-28_01-30-49.log] [testng] 01:30:49,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a2475a - End of configuration. [testng] [2024-06-28 01:30:49,097] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:30:49,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:49,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-28_01-30-49.log] [testng] 01:30:49,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c40181f - End of configuration. [testng] [2024-06-28 01:30:49,113] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:30:49,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:49,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-28_01-30-49.log] [testng] 01:30:49,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43594524 - End of configuration. [testng] [2024-06-28 01:30:49,143] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:30:49,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:49,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-28_01-30-49.log] [testng] 01:30:49,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6205bb4f - End of configuration. [testng] [2024-06-28 01:30:49,165] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:30:49,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:49,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-28_01-30-49.log] [testng] 01:30:49,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100458df - End of configuration. [testng] [2024-06-28 01:30:49,203] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:30:49,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:49,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-28_01-30-49.log] [testng] 01:30:49,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c64db48 - End of configuration. [testng] [2024-06-28 01:30:49,258] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:30:49,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:49,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-28_01-30-49.log] [testng] 01:30:49,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@179b9cc1 - End of configuration. [testng] [2024-06-28 01:30:51,792] [pool-1-thread-10] Initializing /data/curtis/image1.bmp: [testng] [2024-06-28 01:30:51,797] [pool-1-thread-6] Initializing /data/stephane/holo0908.bmp: [testng] [2024-06-28 01:30:51,806] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-06-28 01:30:51,814] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-06-28 01:30:51,820] [pool-1-thread-2] Initializing /data/curtis/image2.bmp: [testng] [2024-06-28 01:30:51,826] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-06-28 01:30:51,832] [pool-1-thread-8] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-06-28 01:30:51,841] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-06-28 01:30:51,848] [pool-1-thread-1] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-06-28 01:30:52,394] [pool-1-thread-10] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-06-28 01:30:52,440] [pool-1-thread-2] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-06-28 01:30:52,908] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-06-28 01:30:52,917] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-06-28 01:30:52,941] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-06-28 01:30:52,946] [pool-1-thread-11] Initializing /data/curtis/image4.bmp: [testng] [2024-06-28 01:30:52,960] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-06-28 01:30:53,079] [pool-1-thread-11] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-06-28 01:30:53,216] [pool-1-thread-1] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-06-28 01:30:53,226] [pool-1-thread-10] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS