![[Jenkins]](/jenkins/static/5093b9c7/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 105 originally caused by: Started by upstream project "Trigger" build number 117 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins18200708797725888980.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16326_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:25:05,599 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:25:05,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:25:05,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:05,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:25:05,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:25:05,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:25:05,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:25:05,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:05,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:25:05,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:25:05,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:25:05,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:25:05,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:25:05,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:25:05,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:25:05,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:25:05,902 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:25:05,902 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:25:05,902 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:25:05,903 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:25:05,903 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:25:05,904 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:25:05,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 300 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-28 02:25:05,915] [main] java.version = 1.8.0_342 [testng] 02:25:05,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:25:05,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:05,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-28_02-25-05.log] [testng] 02:25:05,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-28 02:25:05,974] [main] testng.directory = /data [testng] [2024-06-28 02:25:05,974] [main] testng.configDirectory = /config [testng] [2024-06-28 02:25:05,988] [main] testng.multiplier = 1.0 [testng] [2024-06-28 02:25:05,988] [main] testng.in-memory = false [testng] [2024-06-28 02:25:05,988] [main] testng.allow-missing = false [testng] [2024-06-28 02:25:05,988] [main] user.language = en [testng] [2024-06-28 02:25:05,989] [main] user.country = ${user.country} [testng] [2024-06-28 02:25:05,989] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-28 02:25:14,196] [main] ---------------------------------------- [testng] [2024-06-28 02:25:14,196] [main] Total files: 67 [testng] [2024-06-28 02:25:14,196] [main] Scan time: 8.207 s (122 ms/file) [testng] [2024-06-28 02:25:14,196] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-28 02:25:47,805] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 02:25:47,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:47,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-28_02-25-47.log] [testng] 02:25:47,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104cf5f2 - End of configuration. [testng] [2024-06-28 02:25:47,847] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims: [testng] 02:25:47,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:47,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-28_02-25-47.log] [testng] 02:25:47,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@206948f6 - End of configuration. [testng] [2024-06-28 02:25:47,867] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:25:47,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:47,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-28_02-25-47.log] [testng] 02:25:47,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52b698d9 - End of configuration. [testng] [2024-06-28 02:25:47,880] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims: [testng] 02:25:47,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:47,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-28_02-25-47.log] [testng] 02:25:47,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44ee4c01 - End of configuration. [testng] [2024-06-28 02:25:47,894] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:25:47,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:47,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-28_02-25-47.log] [testng] 02:25:47,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d32e6eb - End of configuration. [testng] [2024-06-28 02:25:47,931] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims: [testng] 02:25:47,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:47,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-28_02-25-47.log] [testng] 02:25:47,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72498d3d - End of configuration. [testng] [2024-06-28 02:25:47,945] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims: [testng] 02:25:47,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:47,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-28_02-25-47.log] [testng] 02:25:47,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@754b72ce - End of configuration. [testng] [2024-06-28 02:25:47,980] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 02:25:47,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:47,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-28_02-25-47.log] [testng] 02:25:47,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa971f7 - End of configuration. [testng] [2024-06-28 02:25:47,994] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims: [testng] 02:25:47,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:47,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:47,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-28_02-25-47.log] [testng] 02:25:47,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6301af16 - End of configuration. [testng] [2024-06-28 02:25:48,056] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:25:48,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:48,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:48,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-28_02-25-48.log] [testng] 02:25:48,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5295c5f2 - End of configuration. [testng] [2024-06-28 02:25:48,081] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 02:25:48,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:48,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:48,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-28_02-25-48.log] [testng] 02:25:48,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c535527 - End of configuration. [testng] [2024-06-28 02:25:48,116] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims: [testng] 02:25:48,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:48,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:48,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-28_02-25-48.log] [testng] 02:25:48,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0dbec2 - End of configuration. [testng] [2024-06-28 02:25:50,105] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0012.ims: [testng] [2024-06-28 02:25:50,118] [pool-1-thread-12] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-06-28 02:25:50,160] [pool-1-thread-6] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims: [testng] [2024-06-28 02:25:50,231] [pool-1-thread-11] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims: [testng] [2024-06-28 02:25:50,254] [pool-1-thread-8] Initializing /data/jake/p75Cherry M2 010-3~B.ims: [testng] [2024-06-28 02:25:50,279] [pool-1-thread-10] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: [testng] [2024-06-28 02:25:50,303] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0010.ims: [testng] [2024-06-28 02:25:50,315] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0006.ims: BUILD SUCCESSFUL Total time: 1 minute 53 seconds Finished: SUCCESS