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Started by upstream project "BIOFORMATS-test-repo" build number 105 originally caused by: Started by upstream project "Trigger" build number 117 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins18425546818922049179.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16367_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:54:06,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:54:06,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:54:06,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:54:06,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:54:06,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:54:06,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:54:06,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:54:06,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:54:06,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:54:06,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:54:06,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:54:06,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:54:06,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:54:06,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:54:06,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:54:06,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:54:06,662 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:54:06,662 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:54:06,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:54:06,664 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:54:06,664 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:54:06,666 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:54:06,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 378 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-28 02:54:06,682] [main] java.version = 1.8.0_342 [testng] 02:54:06,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:54:06,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:06,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-28_02-54-06.log] [testng] 02:54:06,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-28 02:54:06,749] [main] testng.directory = /data [testng] [2024-06-28 02:54:06,749] [main] testng.configDirectory = /config [testng] [2024-06-28 02:54:06,763] [main] testng.multiplier = 1.0 [testng] [2024-06-28 02:54:06,764] [main] testng.in-memory = false [testng] [2024-06-28 02:54:06,764] [main] testng.allow-missing = false [testng] [2024-06-28 02:54:06,764] [main] user.language = en [testng] [2024-06-28 02:54:06,764] [main] user.country = ${user.country} [testng] [2024-06-28 02:54:06,764] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-28 02:54:08,116] [main] ---------------------------------------- [testng] [2024-06-28 02:54:08,116] [main] Total files: 22 [testng] [2024-06-28 02:54:08,116] [main] Scan time: 1.352 s (61 ms/file) [testng] [2024-06-28 02:54:08,116] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-28 02:54:15,663] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw: [testng] 02:54:15,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:54:15,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-28_02-54-15.log] [testng] 02:54:15,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a167d66 - End of configuration. [testng] [2024-06-28 02:54:15,718] [pool-1-thread-12] Initializing /data/xiuwen/head2.seq: [testng] 02:54:15,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:54:15,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-28_02-54-15.log] [testng] 02:54:15,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@395e1fae - End of configuration. [testng] [2024-06-28 02:54:15,850] [pool-1-thread-11] Initializing /data/converted/clown.ipw: [testng] 02:54:15,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:54:15,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-28_02-54-15.log] [testng] 02:54:15,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227b2afb - End of configuration. [testng] [2024-06-28 02:54:15,871] [pool-1-thread-10] Initializing /data/converted/dub01.ipw: [testng] 02:54:15,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:54:15,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-28_02-54-15.log] [testng] 02:54:15,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693c9e21 - End of configuration. [testng] [2024-06-28 02:54:15,910] [pool-1-thread-9] Initializing /data/converted/clown.seq: [testng] 02:54:15,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:54:15,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-28_02-54-15.log] [testng] 02:54:15,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b68ce6 - End of configuration. [testng] [2024-06-28 02:54:15,938] [pool-1-thread-8] Initializing /data/converted/clown8c.seq: [testng] 02:54:15,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:54:15,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-28_02-54-15.log] [testng] 02:54:15,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f7af6e6 - End of configuration. [testng] [2024-06-28 02:54:15,959] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips: [testng] 02:54:15,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:54:15,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-28_02-54-15.log] [testng] 02:54:15,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d84f45 - End of configuration. [testng] [2024-06-28 02:54:15,978] [pool-1-thread-6] Initializing /data/converted/mitosis-test.tif: [testng] 02:54:15,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:54:15,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:15,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-28_02-54-15.log] [testng] 02:54:15,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@783fa131 - End of configuration. [testng] [2024-06-28 02:54:16,204] [pool-1-thread-5] Initializing /data/converted/clown.tif: [testng] 02:54:16,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:54:16,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:16,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-28_02-54-16.log] [testng] 02:54:16,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@425bde39 - End of configuration. [testng] [2024-06-28 02:54:16,225] [pool-1-thread-4] Initializing /data/converted/dub01.seq: [testng] 02:54:16,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:54:16,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:16,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-28_02-54-16.log] [testng] 02:54:16,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672640b9 - End of configuration. [testng] [2024-06-28 02:54:16,263] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ: [testng] 02:54:16,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:54:16,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:16,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-28_02-54-16.log] [testng] 02:54:16,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23a925c7 - End of configuration. [testng] [2024-06-28 02:54:16,304] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 02:54:16,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:54:16,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:16,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-28_02-54-16.log] [testng] 02:54:16,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@217ae782 - End of configuration. [testng] [2024-06-28 02:54:18,499] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2024-06-28 02:54:18,526] [pool-1-thread-9] Initializing /data/converted/dub01.pic: [testng] [2024-06-28 02:54:18,568] [pool-1-thread-5] Initializing /data/converted/clown8c.tif: [testng] [2024-06-28 02:54:18,598] [pool-1-thread-11] Initializing /data/samples/PROBE.TIF: [testng] [2024-06-28 02:54:18,617] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] [2024-06-28 02:54:18,654] [pool-1-thread-4] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-06-28 02:54:18,701] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw: [testng] [2024-06-28 02:54:18,717] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] [2024-06-28 02:54:18,807] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS