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Started by upstream project "BIOFORMATS-test-repo" build number 11 originally caused by: Started by upstream project "Trigger" build number 14 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8075678865334772218.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_1637_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:27:20,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:27:20,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:27:20,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:20,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:27:20,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:27:20,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:27:20,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:27:20,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:20,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:27:20,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:27:20,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:27:20,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:27:20,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:27:20,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:27:20,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:27:20,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:27:20,830 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:27:20,831 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:27:20,831 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:27:20,831 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:27:20,831 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:27:20,832 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:27:20,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-25 00:27:20,843] [main] java.version = 1.8.0_342 [testng] 00:27:20,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:27:20,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:20,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_00-27-20.log] [testng] 00:27:20,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-25 00:27:20,900] [main] testng.directory = /data [testng] [2024-03-25 00:27:20,901] [main] testng.configDirectory = /config [testng] [2024-03-25 00:27:20,975] [main] testng.multiplier = 1.0 [testng] [2024-03-25 00:27:20,976] [main] testng.in-memory = false [testng] [2024-03-25 00:27:20,976] [main] testng.allow-missing = false [testng] [2024-03-25 00:27:20,976] [main] user.language = fr [testng] [2024-03-25 00:27:20,976] [main] user.country = FR [testng] [2024-03-25 00:27:20,976] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-25 00:27:52,375] [main] ---------------------------------------- [testng] [2024-03-25 00:27:52,376] [main] Total files: 226 [testng] [2024-03-25 00:27:52,376] [main] Scan time: 31.399 s (138 ms/file) [testng] [2024-03-25 00:27:52,376] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-25 00:28:15,670] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 00:28:15,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:28:15,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:15,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_00-28-15.log] [testng] 00:28:15,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5abff605 - End of configuration. [testng] [2024-03-25 00:28:15,857] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 00:28:15,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:28:15,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:15,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-25_00-28-15.log] [testng] 00:28:15,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a05f70 - End of configuration. [testng] [2024-03-25 00:28:15,889] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 00:28:15,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:28:15,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:15,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-25_00-28-15.log] [testng] 00:28:15,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f42dcdf - End of configuration. [testng] [2024-03-25 00:28:15,916] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 00:28:15,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:28:15,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:15,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-25_00-28-15.log] [testng] 00:28:15,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b5cd2b - End of configuration. [testng] [2024-03-25 00:28:15,927] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 00:28:15,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:28:15,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:15,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_00-28-15.log] [testng] 00:28:15,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7782f36 - End of configuration. [testng] [2024-03-25 00:28:15,998] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:28:15,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:28:15,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:15,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_00-28-15.log] [testng] 00:28:16,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb278b6 - End of configuration. [testng] [2024-03-25 00:28:16,045] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 00:28:16,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:28:16,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:16,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_00-28-16.log] [testng] 00:28:16,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b022300 - End of configuration. [testng] [2024-03-25 00:28:16,077] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 00:28:16,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:28:16,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:16,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_00-28-16.log] [testng] 00:28:16,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@103c16ea - End of configuration. [testng] [2024-03-25 00:28:16,088] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 00:28:16,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:28:16,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:16,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_00-28-16.log] [testng] 00:28:16,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@658851d3 - End of configuration. [testng] [2024-03-25 00:28:16,234] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 00:28:16,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:28:16,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:16,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_00-28-16.log] [testng] 00:28:16,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60e0119a - End of configuration. [testng] [2024-03-25 00:28:16,243] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 00:28:16,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:28:16,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:16,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_00-28-16.log] [testng] 00:28:16,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690351fd - End of configuration. [testng] [2024-03-25 00:28:16,253] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 00:28:16,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:28:16,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:16,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_00-28-16.log] [testng] 00:28:16,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1e1d04 - End of configuration. [testng] [2024-03-25 00:28:18,174] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-03-25 00:28:18,230] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-03-25 00:28:18,271] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-03-25 00:28:18,337] [pool-1-thread-10] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-03-25 00:28:18,350] [pool-1-thread-6] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-03-25 00:28:18,361] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-03-25 00:28:18,383] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-03-25 00:28:18,403] [pool-1-thread-2] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-03-25 00:28:18,508] [pool-1-thread-1] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-03-25 00:28:18,731] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-03-25 00:28:19,708] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-03-25 00:28:19,925] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-03-25 00:28:19,940] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-03-25 00:28:20,090] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-03-25 00:28:20,353] [pool-1-thread-12] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-03-25 00:28:20,466] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 7 seconds Finished: SUCCESS