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Started by upstream project "BIOFORMATS-test-repo" build number 106 originally caused by: Started by upstream project "Trigger" build number 118 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1203852824961715594.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16376_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:22:13,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:13,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:22:13,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:13,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:13,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:13,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:13,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:13,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:13,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:13,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:13,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:13,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:14,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:14,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:14,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:14,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:14,054 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:14,054 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:14,054 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:14,055 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:14,055 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:22:14,056 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:22:14,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-29 01:22:14,064] [main] java.version = 11.0.16 [testng] 01:22:14,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:14,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:14,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-29_01-22-14.log] [testng] 01:22:14,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-29 01:22:14,112] [main] testng.directory = /data [testng] [2024-06-29 01:22:14,112] [main] testng.configDirectory = /config [testng] [2024-06-29 01:22:14,121] [main] testng.multiplier = 1.0 [testng] [2024-06-29 01:22:14,122] [main] testng.in-memory = false [testng] [2024-06-29 01:22:14,123] [main] testng.allow-missing = false [testng] [2024-06-29 01:22:14,123] [main] user.language = en [testng] [2024-06-29 01:22:14,123] [main] user.country = ${user.country} [testng] [2024-06-29 01:22:14,123] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-29 01:22:14,975] [main] ---------------------------------------- [testng] [2024-06-29 01:22:14,975] [main] Total files: 103 [testng] [2024-06-29 01:22:14,975] [main] Scan time: 0.852 s (8 ms/file) [testng] [2024-06-29 01:22:14,975] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-29 01:22:22,391] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] 01:22:22,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:22,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-29_01-22-22.log] [testng] 01:22:22,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@594b0b2a - End of configuration. [testng] [2024-06-29 01:22:22,439] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] 01:22:22,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:22,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-29_01-22-22.log] [testng] 01:22:22,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1429c71b - End of configuration. [testng] [2024-06-29 01:22:22,460] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] 01:22:22,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:22,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-29_01-22-22.log] [testng] 01:22:22,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10221a1d - End of configuration. [testng] [2024-06-29 01:22:22,533] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] 01:22:22,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:22,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-29_01-22-22.log] [testng] 01:22:22,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ba8f6a - End of configuration. [testng] [2024-06-29 01:22:22,708] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 01:22:22,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:22,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-29_01-22-22.log] [testng] 01:22:22,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d07b87 - End of configuration. [testng] [2024-06-29 01:22:22,951] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] 01:22:22,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:22,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-29_01-22-22.log] [testng] 01:22:22,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44859c38 - End of configuration. [testng] [2024-06-29 01:22:22,982] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 01:22:22,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:22,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-29_01-22-22.log] [testng] 01:22:22,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538366a3 - End of configuration. [testng] [2024-06-29 01:22:23,056] [pool-1-thread-6] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] 01:22:23,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:23,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-29_01-22-23.log] [testng] 01:22:23,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d21b2c3 - End of configuration. [testng] [2024-06-29 01:22:23,114] [pool-1-thread-5] Initializing /data/ofra/lowloss.dm3: [testng] 01:22:23,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:23,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-29_01-22-23.log] [testng] 01:22:23,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378dfbbd - End of configuration. [testng] [2024-06-29 01:22:23,130] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] 01:22:23,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:23,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-29_01-22-23.log] [testng] 01:22:23,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e5e7cad - End of configuration. [testng] [2024-06-29 01:22:23,187] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] 01:22:23,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:23,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-29_01-22-23.log] [testng] 01:22:23,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4745ac65 - End of configuration. [testng] [2024-06-29 01:22:23,204] [pool-1-thread-2] Initializing /data/jay/recAmaghi.dm3: [testng] 01:22:23,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:23,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-29_01-22-23.log] [testng] 01:22:23,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2eaba4 - End of configuration. [testng] [2024-06-29 01:22:25,517] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-06-29 01:22:25,528] [pool-1-thread-12] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-06-29 01:22:25,560] [pool-1-thread-5] Initializing /data/jay/smallerfile.dm3: [testng] [2024-06-29 01:22:25,599] [pool-1-thread-6] Initializing /data/jay/DMtest2.dm3: [testng] [2024-06-29 01:22:25,895] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-06-29 01:22:26,247] [pool-1-thread-7] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-06-29 01:22:26,318] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-06-29 01:22:26,806] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-06-29 01:22:26,863] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-06-29 01:22:26,984] [pool-1-thread-5] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-06-29 01:22:27,238] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-06-29 01:22:27,765] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-06-29 01:22:27,879] [pool-1-thread-1] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-06-29 01:22:28,432] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-06-29 01:22:29,345] [pool-1-thread-2] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-06-29 01:22:29,452] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-06-29 01:22:29,479] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-06-29 01:22:30,059] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-06-29 01:22:30,320] [pool-1-thread-11] Initializing /data/samples/test-tiles.dm3: [testng] [2024-06-29 01:22:30,372] [pool-1-thread-1] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-06-29 01:22:30,959] [pool-1-thread-11] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-06-29 01:22:31,256] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-06-29 01:22:31,942] [pool-1-thread-12] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-06-29 01:22:32,517] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-06-29 01:22:32,891] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-06-29 01:22:32,997] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-06-29 01:22:34,083] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-06-29 01:22:34,851] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-06-29 01:22:35,913] [pool-1-thread-5] Initializing /data/jay/camtest1.dm3: [testng] [2024-06-29 01:22:35,925] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-06-29 01:22:37,703] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-06-29 01:22:39,107] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-06-29 01:22:39,344] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-06-29 01:22:39,571] [pool-1-thread-2] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-06-29 01:22:39,584] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-06-29 01:22:40,631] [pool-1-thread-1] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-06-29 01:22:42,375] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-06-29 01:22:44,789] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-06-29 01:22:46,341] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-06-29 01:22:46,904] [pool-1-thread-11] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-06-29 01:22:47,370] [pool-1-thread-12] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-06-29 01:22:48,445] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-06-29 01:22:48,503] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-06-29 01:22:51,209] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-06-29 01:22:52,990] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-06-29 01:22:53,127] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-06-29 01:22:53,704] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-06-29 01:22:54,103] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-06-29 01:22:54,788] [pool-1-thread-11] Initializing /data/jay/dnasample.tif: [testng] [2024-06-29 01:22:56,016] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-06-29 01:22:56,119] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-06-29 01:22:56,957] [pool-1-thread-1] Initializing /data/jay/DMtest.dm3: [testng] [2024-06-29 01:22:57,408] [pool-1-thread-3] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-06-29 01:22:58,029] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-06-29 01:22:58,914] [pool-1-thread-12] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-06-29 01:22:59,749] [pool-1-thread-3] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-06-29 01:23:00,619] [pool-1-thread-11] Initializing /data/qa-21761/example.dm4: [testng] [2024-06-29 01:23:01,064] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-06-29 01:23:01,369] [pool-1-thread-1] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-06-29 01:23:01,416] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-06-29 01:23:01,980] [pool-1-thread-2] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-06-29 01:23:02,100] [pool-1-thread-5] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-06-29 01:23:02,300] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-06-29 01:23:03,265] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-06-29 01:23:03,568] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-06-29 01:23:04,513] [pool-1-thread-9] Initializing /data/qa-7642/8.dm4: [testng] [2024-06-29 01:23:04,640] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-06-29 01:23:05,110] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-06-29 01:23:05,729] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-06-29 01:23:06,066] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-06-29 01:23:06,280] [pool-1-thread-7] Initializing /data/melissa/annotation-test.tif: [testng] [2024-06-29 01:23:06,405] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-06-29 01:23:06,707] [pool-1-thread-9] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-06-29 01:23:06,849] [pool-1-thread-7] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-06-29 01:23:07,090] [pool-1-thread-7] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-06-29 01:23:07,459] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-06-29 01:23:07,554] [pool-1-thread-2] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-06-29 01:23:07,789] [pool-1-thread-5] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-06-29 01:23:07,823] [pool-1-thread-7] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-06-29 01:23:07,963] [pool-1-thread-6] Initializing /data/jay/dnasample1.dm3: [testng] [2024-06-29 01:23:08,191] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-06-29 01:23:08,639] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-06-29 01:23:08,973] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-06-29 01:23:09,104] [pool-1-thread-4] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-06-29 01:23:09,129] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-06-29 01:23:09,574] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 22 seconds Finished: SUCCESS