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Started by upstream project "BIOFORMATS-test-repo" build number 106 originally caused by: Started by upstream project "Trigger" build number 118 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1175662449061932252.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16424_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:31:27,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:31:27,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:31:27,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:27,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:27,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:27,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:27,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:27,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:27,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:27,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:27,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:27,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:28,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:28,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:28,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:28,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:28,074 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:28,075 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:28,075 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:28,076 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:28,076 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:31:28,077 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:31:28,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-29 01:31:28,090] [main] java.version = 11.0.16 [testng] 01:31:28,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:28,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:28,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-29_01-31-28.log] [testng] 01:31:28,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-29 01:31:28,159] [main] testng.directory = /data [testng] [2024-06-29 01:31:28,159] [main] testng.configDirectory = /config [testng] [2024-06-29 01:31:28,174] [main] testng.multiplier = 1.0 [testng] [2024-06-29 01:31:28,176] [main] testng.in-memory = false [testng] [2024-06-29 01:31:28,176] [main] testng.allow-missing = false [testng] [2024-06-29 01:31:28,176] [main] user.language = en [testng] [2024-06-29 01:31:28,176] [main] user.country = ${user.country} [testng] [2024-06-29 01:31:28,177] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-29 01:31:28,608] [main] ---------------------------------------- [testng] [2024-06-29 01:31:28,608] [main] Total files: 25 [testng] [2024-06-29 01:31:28,608] [main] Scan time: 0.431 s (17 ms/file) [testng] [2024-06-29 01:31:28,608] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-29 01:31:30,545] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 01:31:30,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:30,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-29_01-31-30.log] [testng] 01:31:30,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@563e6595 - End of configuration. [testng] [2024-06-29 01:31:30,592] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:31:30,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:30,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-29_01-31-30.log] [testng] 01:31:30,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8305c7 - End of configuration. [testng] [2024-06-29 01:31:30,606] [pool-1-thread-11] Initializing /data/misc/planet.png: [testng] 01:31:30,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:30,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-29_01-31-30.log] [testng] 01:31:30,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5144c452 - End of configuration. [testng] [2024-06-29 01:31:30,615] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 01:31:30,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:30,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-29_01-31-30.log] [testng] 01:31:30,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f590b5 - End of configuration. [testng] [2024-06-29 01:31:30,649] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:31:30,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:30,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-29_01-31-30.log] [testng] 01:31:30,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@556beac6 - End of configuration. [testng] [2024-06-29 01:31:30,818] [pool-1-thread-8] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:31:30,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:30,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-29_01-31-30.log] [testng] 01:31:30,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a45b5e1 - End of configuration. [testng] [2024-06-29 01:31:30,832] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT: [testng] 01:31:30,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:30,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-29_01-31-30.log] [testng] 01:31:30,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f992d8c - End of configuration. [testng] [2024-06-29 01:31:30,855] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] 01:31:30,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:30,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-29_01-31-30.log] [testng] 01:31:30,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24d2e027 - End of configuration. [testng] [2024-06-29 01:31:30,884] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] 01:31:30,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:30,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-29_01-31-30.log] [testng] 01:31:30,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@154a4204 - End of configuration. [testng] [2024-06-29 01:31:30,907] [pool-1-thread-4] Initializing /data/jqd/mireSixteen.pict: [testng] 01:31:30,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:30,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-29_01-31-30.log] [testng] 01:31:30,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505b05e - End of configuration. [testng] [2024-06-29 01:31:30,919] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 01:31:30,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:30,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-29_01-31-30.log] [testng] 01:31:30,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6603c86e - End of configuration. [testng] [2024-06-29 01:31:30,940] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict: [testng] 01:31:30,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:30,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:30,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-29_01-31-30.log] [testng] 01:31:30,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f179594 - End of configuration. [testng] [2024-06-29 01:31:32,603] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-06-29 01:31:32,618] [pool-1-thread-8] Initializing /data/jqd/mire32.pict: [testng] [2024-06-29 01:31:32,635] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2024-06-29 01:31:32,656] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-06-29 01:31:33,333] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-06-29 01:31:33,398] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-06-29 01:31:33,485] [pool-1-thread-7] Initializing /data/misc/planet.pict: [testng] [2024-06-29 01:31:33,588] [pool-1-thread-2] Initializing /data/jqd/32bit.pict: [testng] [2024-06-29 01:31:33,975] [pool-1-thread-6] Initializing /data/brian/images/BLU.PCT: [testng] [2024-06-29 01:31:34,000] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [2024-06-29 01:31:34,362] [pool-1-thread-1] Initializing /data/misc/planet2.pict: [testng] [2024-06-29 01:31:34,504] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-06-29 01:31:34,523] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS