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Started by upstream project "BIOFORMATS-test-repo" build number 106 originally caused by: Started by upstream project "Trigger" build number 118 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12711165579536993500.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16458_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:58:23,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:58:23,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:58:23,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:23,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:23,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:58:23,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:58:23,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:58:23,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:23,923 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:23,924 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:58:23,924 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:58:23,924 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:58:24,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:58:24,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:58:24,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:58:24,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:58:24,144 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:58:24,145 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:58:24,145 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:58:24,145 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:58:24,145 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:58:24,146 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:58:24,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 223 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-29 01:58:24,157] [main] java.version = 11.0.16 [testng] 01:58:24,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:58:24,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:24,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-29_01-58-24.log] [testng] 01:58:24,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-29 01:58:24,214] [main] testng.directory = /data [testng] [2024-06-29 01:58:24,214] [main] testng.configDirectory = /config [testng] [2024-06-29 01:58:24,227] [main] testng.multiplier = 1.0 [testng] [2024-06-29 01:58:24,229] [main] testng.in-memory = false [testng] [2024-06-29 01:58:24,229] [main] testng.allow-missing = false [testng] [2024-06-29 01:58:24,230] [main] user.language = en [testng] [2024-06-29 01:58:24,230] [main] user.country = ${user.country} [testng] [2024-06-29 01:58:24,230] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-29 02:05:26,581] [main] ---------------------------------------- [testng] [2024-06-29 02:05:26,582] [main] Total files: 7329 [testng] [2024-06-29 02:05:26,582] [main] Scan time: 422.351 s (57 ms/file) [testng] [2024-06-29 02:05:26,582] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-29 02:08:24,841] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:08:24,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:24,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:24,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-29_02-08-24.log] [testng] 02:08:24,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39b4770b - End of configuration. [testng] [2024-06-29 02:08:24,942] [pool-1-thread-1] Used files list does not include base file [testng] [2024-06-29 02:08:24,948] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:08:24,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:24,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:24,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-29_02-08-24.log] [testng] 02:08:24,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b98ad38 - End of configuration. [testng] [2024-06-29 02:08:25,475] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:08:25,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:25,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-29_02-08-25.log] [testng] 02:08:25,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6225037d - End of configuration. [testng] [2024-06-29 02:08:25,601] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:08:25,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:25,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-29_02-08-25.log] [testng] 02:08:25,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a4a1370 - End of configuration. [testng] [2024-06-29 02:08:25,681] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:08:25,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:25,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-29_02-08-25.log] [testng] 02:08:25,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36cf9272 - End of configuration. [testng] [2024-06-29 02:08:25,775] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-29 02:08:25,782] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:08:25,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:25,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-29_02-08-25.log] [testng] 02:08:25,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3003b642 - End of configuration. [testng] [2024-06-29 02:08:25,830] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:08:25,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:25,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-29_02-08-25.log] [testng] 02:08:25,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@213d1f2c - End of configuration. [testng] [2024-06-29 02:08:25,858] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:08:25,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:25,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-29_02-08-25.log] [testng] 02:08:25,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459bd816 - End of configuration. [testng] [2024-06-29 02:08:25,939] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:08:25,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:25,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:25,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-29_02-08-25.log] [testng] 02:08:25,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55579d96 - End of configuration. [testng] [2024-06-29 02:08:26,022] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-29 02:08:26,025] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:08:26,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:26,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:26,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-29_02-08-26.log] [testng] 02:08:26,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b35c3c - End of configuration. [testng] [2024-06-29 02:08:26,168] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:08:26,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:26,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:26,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-29_02-08-26.log] [testng] 02:08:26,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35678f3f - End of configuration. [testng] [2024-06-29 02:08:26,233] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:08:26,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:26,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:26,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-29_02-08-26.log] [testng] 02:08:26,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eaa7b41 - End of configuration. [testng] [2024-06-29 02:08:28,028] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-29 02:08:29,139] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-29 02:08:29,896] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-06-29 02:08:29,952] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-29 02:08:30,195] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-29 02:08:30,326] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-29 02:08:30,753] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-29 02:08:31,335] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-29 02:08:31,727] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-29 02:08:32,063] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-06-29 02:08:32,317] [pool-1-thread-1] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-29 02:08:32,363] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-29 02:08:32,496] [pool-1-thread-9] Initializing /data/samples/zseries.stk: [testng] [2024-06-29 02:08:32,654] [pool-1-thread-4] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-29 02:08:33,277] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-29 02:08:33,312] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-29 02:08:33,383] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-06-29 02:08:33,525] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-29 02:08:33,845] [pool-1-thread-6] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-29 02:08:34,369] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-29 02:08:34,422] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-06-29 02:08:34,522] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-29 02:08:34,636] [pool-1-thread-10] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-29 02:08:35,071] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-29 02:08:35,159] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-29 02:08:37,795] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-29 02:08:37,955] [pool-1-thread-4] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-29 02:08:38,081] [pool-1-thread-5] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-29 02:08:38,608] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2024-06-29 02:08:39,402] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-29 02:08:39,503] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-29 02:08:39,629] [pool-1-thread-8] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-29 02:08:39,724] [pool-1-thread-3] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-29 02:08:39,877] [pool-1-thread-1] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-29 02:08:40,696] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-29 02:08:41,004] [pool-1-thread-11] Initializing /data/samples/zserEight.stk: [testng] [2024-06-29 02:08:41,259] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-06-29 02:08:41,354] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-29 02:08:41,439] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-29 02:08:41,531] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-29 02:08:44,009] [pool-1-thread-3] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-29 02:08:44,287] [pool-1-thread-10] Initializing /data/samples/zser24.stk: [testng] [2024-06-29 02:08:44,319] [pool-1-thread-8] Initializing 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Initializing /data/samples/diatoms3d.stk: [testng] [2024-06-29 02:08:46,977] [pool-1-thread-3] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-06-29 02:08:47,318] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-06-29 02:08:47,625] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-06-29 02:08:48,308] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-29 02:08:48,570] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-29 02:08:48,647] [pool-1-thread-7] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-06-29 02:08:48,883] [pool-1-thread-11] Initializing /data/samples/10xcalib.tif: [testng] [2024-06-29 02:08:49,309] [pool-1-thread-7] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-29 02:08:49,433] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-29 02:08:49,460] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-29 02:08:51,603] [pool-1-thread-6] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-29 02:08:51,650] [pool-1-thread-11] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-29 02:08:53,148] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-29 02:08:53,202] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-29 02:08:53,247] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-29 02:08:53,821] [pool-1-thread-9] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-29 02:08:54,459] [pool-1-thread-5] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-29 02:08:54,974] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-29 02:08:54,994] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-29 02:08:54,995] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-06-29 02:08:55,046] [pool-1-thread-6] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. 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[testng] [2024-06-29 02:08:59,140] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-29 02:08:59,640] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-06-29 02:08:59,900] [pool-1-thread-10] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-29 02:09:00,261] [pool-1-thread-8] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-29 02:09:00,530] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-29 02:09:00,559] [pool-1-thread-5] Used files list does not include base file [testng] [2024-06-29 02:09:00,560] [pool-1-thread-2] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-29 02:09:00,628] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-06-29 02:09:01,194] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-11] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-06-29 02:09:12,594] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-29 02:09:12,641] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-29 02:09:12,694] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-29 02:09:13,175] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-29 02:09:13,752] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-29 02:09:14,111] [pool-1-thread-6] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-06-29 02:09:14,493] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-29 02:09:15,137] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-29 02:09:15,508] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-29 02:09:15,745] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-29 02:09:15,907] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-29 02:09:16,395] [pool-1-thread-9] Initializing /data/jerome/deconv.STK: [testng] [2024-06-29 02:09:16,906] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2024-06-29 02:09:17,684] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-29 02:09:17,751] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-29 02:09:17,840] [pool-1-thread-6] Initializing 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02:09:21,590] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-29 02:09:22,820] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-06-29 02:09:23,175] [pool-1-thread-1] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-29 02:09:23,233] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-06-29 02:09:23,869] [pool-1-thread-10] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-29 02:09:24,178] [pool-1-thread-2] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-06-29 02:09:24,464] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-29 02:09:24,522] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-29 02:09:24,524] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-29 02:09:26,424] [pool-1-thread-12] Initializing 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[2024-06-29 02:09:31,199] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-29 02:09:31,245] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-29 02:09:31,510] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-29 02:09:31,740] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-06-29 02:09:32,816] [pool-1-thread-2] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-06-29 02:09:33,164] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-06-29 02:09:33,503] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-06-29 02:09:33,936] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-06-29 02:09:34,448] [pool-1-thread-2] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-29 02:09:35,328] [pool-1-thread-9] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-29 02:09:35,660] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-29 02:09:35,720] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-06-29 02:09:36,218] [pool-1-thread-9] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-29 02:09:36,512] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-06-29 02:09:36,955] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-29 02:09:37,049] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-29 02:09:37,109] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-29 02:09:37,140] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-29 02:09:37,250] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-29 02:09:37,380] [pool-1-thread-12] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-29 02:09:37,809] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-29 02:09:38,198] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-29 02:09:38,916] [pool-1-thread-8] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-29 02:09:39,156] [pool-1-thread-11] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-29 02:09:45,639] [pool-1-thread-1] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-06-29 02:09:45,705] [pool-1-thread-9] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-06-29 02:09:46,803] [pool-1-thread-2] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-29 02:09:46,911] [pool-1-thread-6] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-29 02:09:47,187] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-06-29 02:09:47,278] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-29 02:09:47,380] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-29 02:09:48,602] [pool-1-thread-1] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-29 02:09:48,879] [pool-1-thread-9] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-29 02:09:48,998] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-29 02:09:49,869] [pool-1-thread-1] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-29 02:09:50,293] [pool-1-thread-9] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-29 02:09:50,360] [pool-1-thread-2] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-29 02:09:50,735] [pool-1-thread-8] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-29 02:09:51,520] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-29 02:09:51,891] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-29 02:09:51,962] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-29 02:09:52,851] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-29 02:09:53,305] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-29 02:09:53,395] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-29 02:09:53,407] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-29 02:09:54,203] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-29 02:09:54,374] [pool-1-thread-8] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-29 02:09:55,182] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-29 02:09:55,732] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-29 02:09:56,433] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-29 02:09:56,497] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-29 02:09:56,610] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-29 02:09:56,808] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-29 02:09:57,016] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-29 02:09:57,074] [pool-1-thread-10] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-29 02:09:57,409] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-29 02:09:57,800] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-29 02:09:58,176] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-29 02:09:59,284] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-29 02:09:59,447] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-29 02:09:59,874] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-29 02:10:00,006] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-29 02:10:00,201] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-29 02:10:00,456] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-29 02:10:00,638] [pool-1-thread-12] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-29 02:10:01,896] [pool-1-thread-5] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-29 02:10:02,165] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-29 02:10:02,407] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-29 02:10:02,608] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-29 02:10:02,682] [pool-1-thread-3] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 22 seconds Finished: SUCCESS