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Started by upstream project "BIOFORMATS-test-repo" build number 107
originally caused by:
 Started by upstream project "Trigger" build number 119
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7960599878757726819.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16575_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:28:38,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:28:38,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:28:38,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:28:38,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:28:38,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:28:38,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:28:38,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:28:38,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:28:38,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:28:38,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:28:38,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:28:38,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:28:38,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:28:38,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:28:38,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:28:38,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:28:38,200 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:28:38,201 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:28:38,201 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:28:38,201 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:28:38,201 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:28:38,202 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:28:38,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-30 01:28:38,210] [main] java.version = 17.0.2
   [testng] 01:28:38,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:28:38,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:38,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-30_01-28-38.log]
   [testng] 01:28:38,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-06-30 01:28:38,256] [main] testng.directory = /data
   [testng] [2024-06-30 01:28:38,256] [main] testng.configDirectory = /config
   [testng] [2024-06-30 01:28:38,264] [main] testng.multiplier = 1.0
   [testng] [2024-06-30 01:28:38,265] [main] testng.in-memory = false
   [testng] [2024-06-30 01:28:38,265] [main] testng.allow-missing = false
   [testng] [2024-06-30 01:28:38,265] [main] user.language = en
   [testng] [2024-06-30 01:28:38,265] [main] user.country = ${user.country}
   [testng] [2024-06-30 01:28:38,265] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-06-30 01:28:38,589] [main] ----------------------------------------
   [testng] [2024-06-30 01:28:38,589] [main] Total files: 21
   [testng] [2024-06-30 01:28:38,589] [main] Scan time: 0.323 s (15 ms/file)
   [testng] [2024-06-30 01:28:38,590] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-30 01:28:39,501] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: 
   [testng] 01:28:39,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:28:39,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-30_01-28-39.log]
   [testng] 01:28:39,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36796a88 - End of configuration.
   [testng] [2024-06-30 01:28:39,518] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA: 
   [testng] 01:28:39,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:28:39,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-30_01-28-39.log]
   [testng] 01:28:39,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386870bb - End of configuration.
   [testng] [2024-06-30 01:28:39,566] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: 
   [testng] 01:28:39,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:28:39,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-30_01-28-39.log]
   [testng] 01:28:39,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6347456e - End of configuration.
   [testng] [2024-06-30 01:28:39,577] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA: 
   [testng] 01:28:39,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:28:39,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-30_01-28-39.log]
   [testng] 01:28:39,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38bb3d81 - End of configuration.
   [testng] [2024-06-30 01:28:39,588] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: 
   [testng] 01:28:39,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:28:39,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-30_01-28-39.log]
   [testng] 01:28:39,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45797649 - End of configuration.
   [testng] [2024-06-30 01:28:39,598] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA: 
   [testng] 01:28:39,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:28:39,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-30_01-28-39.log]
   [testng] 01:28:39,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df9a0a6 - End of configuration.
   [testng] [2024-06-30 01:28:39,609] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA: 
   [testng] 01:28:39,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:28:39,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-30_01-28-39.log]
   [testng] 01:28:39,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d486ce - End of configuration.
   [testng] [2024-06-30 01:28:39,627] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA: 
   [testng] 01:28:39,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:28:39,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-30_01-28-39.log]
   [testng] 01:28:39,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37108b4a - End of configuration.
   [testng] [2024-06-30 01:28:39,638] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: 
   [testng] 01:28:39,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:28:39,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-30_01-28-39.log]
   [testng] 01:28:39,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3254f22f - End of configuration.
   [testng] [2024-06-30 01:28:39,649] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: 
   [testng] 01:28:39,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:28:39,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-30_01-28-39.log]
   [testng] 01:28:39,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22034798 - End of configuration.
   [testng] [2024-06-30 01:28:39,661] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA: 
   [testng] 01:28:39,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:28:39,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-30_01-28-39.log]
   [testng] 01:28:39,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fdce4b4 - End of configuration.
   [testng] [2024-06-30 01:28:39,671] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: 
   [testng] 01:28:39,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:28:39,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-30_01-28-39.log]
   [testng] 01:28:39,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6732c003 - End of configuration.
   [testng] [2024-06-30 01:28:41,129] [pool-1-thread-4] Initializing /data/samples/CBW8.TGA: 
   [testng] [2024-06-30 01:28:41,136] [pool-1-thread-11] Initializing /data/samples/UTC24.TGA: 
   [testng] [2024-06-30 01:28:41,143] [pool-1-thread-5] Initializing /data/samples/CTC16.TGA: 
   [testng] [2024-06-30 01:28:41,150] [pool-1-thread-8] Initializing /data/samples/FLAG_B32.TGA: 
   [testng] [2024-06-30 01:28:41,157] [pool-1-thread-6] Initializing /data/samples/XING_B24.TGA: 
   [testng] [2024-06-30 01:28:41,165] [pool-1-thread-1] Initializing /data/samples/XING_B16.TGA: 
   [testng] [2024-06-30 01:28:41,172] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: 
   [testng] [2024-06-30 01:28:41,178] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA: 
   [testng] [2024-06-30 01:28:41,185] [pool-1-thread-9] Initializing /data/samples/XING_T32.TGA: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 6 seconds
Finished: SUCCESS