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Started by upstream project "BIOFORMATS-test-repo" build number 108 originally caused by: Started by upstream project "Trigger" build number 120 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins27477278949935493.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_16702_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:32:02,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:32:02,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:32:02,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:32:02,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:32:02,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:32:02,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:32:02,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:32:02,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:32:02,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:32:02,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:32:02,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:32:02,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:32:02,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:32:02,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:32:02,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:32:02,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:32:02,477 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:32:02,477 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:32:02,477 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:32:02,478 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:32:02,478 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:32:02,479 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:32:02,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-01 02:32:02,489] [main] java.version = 1.8.0_342 [testng] 02:32:02,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:32:02,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:02,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-01_02-32-02.log] [testng] 02:32:02,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-01 02:32:02,548] [main] testng.directory = /data [testng] [2024-07-01 02:32:02,548] [main] testng.configDirectory = /config [testng] [2024-07-01 02:32:02,563] [main] testng.multiplier = 1.0 [testng] [2024-07-01 02:32:02,563] [main] testng.in-memory = false [testng] [2024-07-01 02:32:02,563] [main] testng.allow-missing = false [testng] [2024-07-01 02:32:02,563] [main] user.language = fr [testng] [2024-07-01 02:32:02,563] [main] user.country = FR [testng] [2024-07-01 02:32:02,563] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-01 02:32:03,067] [main] ---------------------------------------- [testng] [2024-07-01 02:32:03,068] [main] Total files: 36 [testng] [2024-07-01 02:32:03,068] [main] Scan time: 0.504 s (14 ms/file) [testng] [2024-07-01 02:32:03,068] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-01 02:32:05,638] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 02:32:05,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:32:05,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-01_02-32-05.log] [testng] 02:32:05,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@710e0600 - End of configuration. [testng] [2024-07-01 02:32:05,683] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 02:32:05,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:32:05,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-01_02-32-05.log] [testng] 02:32:05,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ee861ed - End of configuration. [testng] [2024-07-01 02:32:05,691] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 02:32:05,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:32:05,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-01_02-32-05.log] [testng] 02:32:05,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35041726 - End of configuration. [testng] [2024-07-01 02:32:05,702] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 02:32:05,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:32:05,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-01_02-32-05.log] [testng] 02:32:05,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59149c41 - End of configuration. [testng] [2024-07-01 02:32:05,709] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 02:32:05,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:32:05,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-01_02-32-05.log] [testng] 02:32:05,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration. [testng] [2024-07-01 02:32:05,714] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 02:32:05,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:32:05,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-01_02-32-05.log] [testng] 02:32:05,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@329dd019 - End of configuration. [testng] [2024-07-01 02:32:05,719] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 02:32:05,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:32:05,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-01_02-32-05.log] [testng] 02:32:05,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ed440f - End of configuration. [testng] [2024-07-01 02:32:05,725] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 02:32:05,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:32:05,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-01_02-32-05.log] [testng] 02:32:05,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681e74f9 - End of configuration. [testng] [2024-07-01 02:32:05,730] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 02:32:05,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:32:05,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-01_02-32-05.log] [testng] 02:32:05,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274a5a38 - End of configuration. [testng] [2024-07-01 02:32:05,736] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 02:32:05,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:32:05,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-01_02-32-05.log] [testng] 02:32:05,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3629b908 - End of configuration. [testng] [2024-07-01 02:32:05,742] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 02:32:05,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:32:05,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-01_02-32-05.log] [testng] 02:32:05,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485e6c9e - End of configuration. [testng] [2024-07-01 02:32:05,749] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 02:32:05,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:32:05,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:05,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-01_02-32-05.log] [testng] 02:32:05,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19f7fd02 - End of configuration. [testng] [2024-07-01 02:32:08,096] [pool-1-thread-7] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-07-01 02:32:08,100] [pool-1-thread-10] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-07-01 02:32:08,103] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-07-01 02:32:08,107] [pool-1-thread-8] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-07-01 02:32:08,110] [pool-1-thread-9] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-07-01 02:32:08,116] [pool-1-thread-4] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-07-01 02:32:08,119] [pool-1-thread-1] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-07-01 02:32:08,125] [pool-1-thread-2] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-07-01 02:32:08,134] [pool-1-thread-6] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-07-01 02:32:08,139] [pool-1-thread-12] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-07-01 02:32:08,142] [pool-1-thread-3] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-07-01 02:32:08,148] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-07-01 02:32:08,462] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-07-01 02:32:08,465] [pool-1-thread-8] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-07-01 02:32:08,488] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-07-01 02:32:08,496] [pool-1-thread-4] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-07-01 02:32:08,501] [pool-1-thread-7] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-07-01 02:32:08,505] [pool-1-thread-6] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-07-01 02:32:08,527] [pool-1-thread-2] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-07-01 02:32:08,531] [pool-1-thread-5] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-07-01 02:32:08,590] [pool-1-thread-10] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-07-01 02:32:08,596] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-07-01 02:32:08,640] [pool-1-thread-7] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS