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Started by upstream project "BIOFORMATS-test-repo" build number 108 originally caused by: Started by upstream project "Trigger" build number 120 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11181853318615940717.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_16728_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:36:02,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:36:02,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:36:02,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:36:02,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:36:02,596 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:36:02,597 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:36:02,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:36:02,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:36:02,597 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:36:02,598 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:36:02,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 480 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-01 02:36:02,609] [main] java.version = 1.8.0_342 [testng] 02:36:02,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:36:02,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:02,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-01_02-36-02.log] [testng] 02:36:02,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-01 02:36:02,669] [main] testng.directory = /data [testng] [2024-07-01 02:36:02,669] [main] testng.configDirectory = /config [testng] [2024-07-01 02:36:02,681] [main] testng.multiplier = 1.0 [testng] [2024-07-01 02:36:02,682] [main] testng.in-memory = false [testng] [2024-07-01 02:36:02,682] [main] testng.allow-missing = false [testng] [2024-07-01 02:36:02,682] [main] user.language = fr [testng] [2024-07-01 02:36:02,682] [main] user.country = FR [testng] [2024-07-01 02:36:02,682] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-01 02:36:16,308] [main] ---------------------------------------- [testng] [2024-07-01 02:36:16,308] [main] Total files: 226 [testng] [2024-07-01 02:36:16,309] [main] Scan time: 13.626 s (60 ms/file) [testng] [2024-07-01 02:36:16,309] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-01 02:36:23,215] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 02:36:23,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:36:23,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-01_02-36-23.log] [testng] 02:36:23,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c71dca - End of configuration. [testng] [2024-07-01 02:36:23,273] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 02:36:23,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:36:23,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-01_02-36-23.log] [testng] 02:36:23,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125510db - End of configuration. [testng] [2024-07-01 02:36:23,286] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 02:36:23,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:36:23,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-01_02-36-23.log] [testng] 02:36:23,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a2adc - End of configuration. [testng] [2024-07-01 02:36:23,307] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 02:36:23,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:36:23,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-01_02-36-23.log] [testng] 02:36:23,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac7e464 - End of configuration. [testng] [2024-07-01 02:36:23,314] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 02:36:23,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:36:23,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-01_02-36-23.log] [testng] 02:36:23,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21dea394 - End of configuration. [testng] [2024-07-01 02:36:23,358] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 02:36:23,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:36:23,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-01_02-36-23.log] [testng] 02:36:23,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c0b0465 - End of configuration. [testng] [2024-07-01 02:36:23,392] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 02:36:23,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:36:23,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-01_02-36-23.log] [testng] 02:36:23,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e829aa - End of configuration. [testng] [2024-07-01 02:36:23,422] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 02:36:23,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:36:23,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-01_02-36-23.log] [testng] 02:36:23,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@732b2eff - End of configuration. [testng] [2024-07-01 02:36:23,432] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 02:36:23,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:36:23,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-01_02-36-23.log] [testng] 02:36:23,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6725ca8c - End of configuration. [testng] [2024-07-01 02:36:23,518] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 02:36:23,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:36:23,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-01_02-36-23.log] [testng] 02:36:23,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e9c2fd0 - End of configuration. [testng] [2024-07-01 02:36:23,526] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 02:36:23,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:36:23,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-01_02-36-23.log] [testng] 02:36:23,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b4d7f3 - End of configuration. [testng] [2024-07-01 02:36:23,531] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 02:36:23,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:36:23,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:36:23,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-01_02-36-23.log] [testng] 02:36:23,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d4194 - End of configuration. [testng] [2024-07-01 02:36:26,034] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-07-01 02:36:26,071] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-07-01 02:36:26,141] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-07-01 02:36:26,157] [pool-1-thread-12] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-07-01 02:36:26,166] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-07-01 02:36:26,214] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-07-01 02:36:26,295] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-07-01 02:36:26,300] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-07-01 02:36:26,306] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-07-01 02:36:26,321] [pool-1-thread-9] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-07-01 02:36:26,329] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-07-01 02:36:26,700] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-07-01 02:36:26,722] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-07-01 02:36:26,769] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-07-01 02:36:26,847] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-07-01 02:36:26,929] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS