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Started by upstream project "BIOFORMATS-test-repo" build number 108 originally caused by: Started by upstream project "Trigger" build number 120 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17461456408653768628.sh + '[' targa = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_16739_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:39:06,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:39:06,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:39:06,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:39:06,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:39:06,768 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:39:06,768 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:39:06,768 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:39:06,768 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:39:06,768 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:39:06,769 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:39:06,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 441 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-01 02:39:06,779] [main] java.version = 1.8.0_342 [testng] 02:39:06,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:39:06,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:06,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-01_02-39-06.log] [testng] 02:39:06,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-01 02:39:06,833] [main] testng.directory = /data [testng] [2024-07-01 02:39:06,833] [main] testng.configDirectory = /config [testng] [2024-07-01 02:39:06,845] [main] testng.multiplier = 1.0 [testng] [2024-07-01 02:39:06,845] [main] testng.in-memory = false [testng] [2024-07-01 02:39:06,846] [main] testng.allow-missing = false [testng] [2024-07-01 02:39:06,846] [main] user.language = fr [testng] [2024-07-01 02:39:06,846] [main] user.country = FR [testng] [2024-07-01 02:39:06,846] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-01 02:39:07,278] [main] ---------------------------------------- [testng] [2024-07-01 02:39:07,278] [main] Total files: 21 [testng] [2024-07-01 02:39:07,278] [main] Scan time: 0.432 s (20 ms/file) [testng] [2024-07-01 02:39:07,278] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-01 02:39:08,751] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 02:39:08,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:39:08,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:08,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-01_02-39-08.log] [testng] 02:39:08,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2112cba0 - End of configuration. [testng] [2024-07-01 02:39:08,780] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 02:39:08,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:39:08,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:08,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-01_02-39-08.log] [testng] 02:39:08,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@402a87d0 - End of configuration. [testng] [2024-07-01 02:39:08,869] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 02:39:08,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:39:08,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:08,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-01_02-39-08.log] [testng] 02:39:08,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6131fc70 - End of configuration. [testng] [2024-07-01 02:39:08,902] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 02:39:08,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:39:08,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:08,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-01_02-39-08.log] [testng] 02:39:08,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eefcd3d - End of configuration. [testng] [2024-07-01 02:39:08,952] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 02:39:08,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:39:08,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:08,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-01_02-39-08.log] [testng] 02:39:08,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@791b6501 - End of configuration. [testng] [2024-07-01 02:39:08,988] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 02:39:08,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:39:08,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:08,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-01_02-39-08.log] [testng] 02:39:08,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration. [testng] [2024-07-01 02:39:08,999] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 02:39:09,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:39:09,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:09,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-01_02-39-09.log] [testng] 02:39:09,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56d90e8b - End of configuration. [testng] [2024-07-01 02:39:09,011] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 02:39:09,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:39:09,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:09,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-01_02-39-09.log] [testng] 02:39:09,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a06bfa4 - End of configuration. [testng] [2024-07-01 02:39:09,022] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 02:39:09,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:39:09,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:09,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-01_02-39-09.log] [testng] 02:39:09,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568c8ef5 - End of configuration. [testng] [2024-07-01 02:39:09,033] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 02:39:09,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:39:09,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:09,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-01_02-39-09.log] [testng] 02:39:09,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@530eb4ff - End of configuration. [testng] [2024-07-01 02:39:09,045] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 02:39:09,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:39:09,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:09,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-01_02-39-09.log] [testng] 02:39:09,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a8d175 - End of configuration. [testng] [2024-07-01 02:39:09,054] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 02:39:09,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:39:09,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:39:09,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-01_02-39-09.log] [testng] 02:39:09,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58f5c944 - End of configuration. [testng] [2024-07-01 02:39:10,843] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] [2024-07-01 02:39:10,852] [pool-1-thread-6] Initializing /data/samples/MARBLES.TGA: [testng] [2024-07-01 02:39:10,865] [pool-1-thread-12] Initializing /data/samples/CCM8.TGA: [testng] [2024-07-01 02:39:10,872] [pool-1-thread-1] Initializing /data/samples/XING_T16.TGA: [testng] [2024-07-01 02:39:10,882] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA: [testng] [2024-07-01 02:39:10,892] [pool-1-thread-9] Initializing /data/samples/XING_B16.TGA: [testng] [2024-07-01 02:39:10,900] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] [2024-07-01 02:39:10,918] [pool-1-thread-8] Initializing /data/samples/UTC24.TGA: [testng] [2024-07-01 02:39:10,924] [pool-1-thread-2] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS