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Started by upstream project "BIOFORMATS-test-repo" build number 108 originally caused by: Started by upstream project "Trigger" build number 120 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17816999305640749785.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_16786_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:09:05,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:09:05,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 03:09:05,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:09:05,721 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:09:05,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:09:05,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:09:05,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:09:05,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:09:05,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:09:05,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:09:05,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:09:05,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:09:05,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:09:05,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:09:05,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:09:05,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:09:05,998 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:09:05,998 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:09:05,998 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:09:05,999 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:09:05,999 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 03:09:06,000 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 03:09:06,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-01 03:09:06,011] [main] java.version = 1.8.0_342 [testng] 03:09:06,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:09:06,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:06,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-01_03-09-06.log] [testng] 03:09:06,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-01 03:09:06,066] [main] testng.directory = /data [testng] [2024-07-01 03:09:06,066] [main] testng.configDirectory = /config [testng] [2024-07-01 03:09:06,079] [main] testng.multiplier = 1.0 [testng] [2024-07-01 03:09:06,080] [main] testng.in-memory = false [testng] [2024-07-01 03:09:06,080] [main] testng.allow-missing = false [testng] [2024-07-01 03:09:06,080] [main] user.language = fr [testng] [2024-07-01 03:09:06,080] [main] user.country = FR [testng] [2024-07-01 03:09:06,080] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-01 03:18:36,011] [main] ---------------------------------------- [testng] [2024-07-01 03:18:36,011] [main] Total files: 7329 [testng] [2024-07-01 03:18:36,011] [main] Scan time: 569.931 s (77 ms/file) [testng] [2024-07-01 03:18:36,012] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-01 03:21:38,722] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 03:21:38,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:21:38,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:38,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-01_03-21-38.log] [testng] 03:21:38,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d8d60db - End of configuration. [testng] [2024-07-01 03:21:38,811] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 03:21:38,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:21:38,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:38,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-01_03-21-38.log] [testng] 03:21:38,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@608d35f1 - End of configuration. [testng] [2024-07-01 03:21:38,876] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 03:21:38,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:21:38,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:38,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-01_03-21-38.log] [testng] 03:21:38,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66198634 - End of configuration. [testng] [2024-07-01 03:21:38,922] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 03:21:38,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:21:38,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:38,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-01_03-21-38.log] [testng] 03:21:38,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6132500 - End of configuration. [testng] [2024-07-01 03:21:39,028] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 03:21:39,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:21:39,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-01_03-21-39.log] [testng] 03:21:39,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad2628e - End of configuration. [testng] [2024-07-01 03:21:39,104] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 03:21:39,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:21:39,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-01_03-21-39.log] [testng] 03:21:39,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc51e20 - End of configuration. [testng] [2024-07-01 03:21:39,127] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 03:21:39,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:21:39,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-01_03-21-39.log] [testng] 03:21:39,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4caa94d8 - End of configuration. [testng] [2024-07-01 03:21:39,219] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 03:21:39,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:21:39,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-01_03-21-39.log] [testng] 03:21:39,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77aca2f7 - End of configuration. [testng] [2024-07-01 03:21:39,315] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 03:21:39,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:21:39,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-01_03-21-39.log] [testng] 03:21:39,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a5e3d53 - End of configuration. [testng] [2024-07-01 03:21:39,345] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 03:21:39,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:21:39,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-01_03-21-39.log] [testng] 03:21:39,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6359aa - End of configuration. [testng] [2024-07-01 03:21:39,431] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 03:21:39,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:21:39,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-01_03-21-39.log] [testng] 03:21:39,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@158b47b - End of configuration. [testng] [2024-07-01 03:21:39,500] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 03:21:39,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:21:39,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:39,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-01_03-21-39.log] [testng] 03:21:39,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ea21165 - End of configuration. [testng] [2024-07-01 03:21:42,370] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-07-01 03:21:44,432] [pool-1-thread-8] Initializing /data/josh/2101to600astk.stk: [testng] [2024-07-01 03:21:53,133] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-01 03:21:53,338] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-07-01 03:21:53,472] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-01 03:21:53,572] [pool-1-thread-6] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-01 03:21:53,640] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-01 03:21:53,786] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:21:53,971] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-07-01 03:21:54,178] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-01 03:21:54,701] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-07-01 03:21:55,236] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-01 03:21:56,303] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-01 03:21:56,371] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-01 03:21:56,850] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-01 03:21:57,063] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-01 03:21:57,255] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-07-01 03:21:57,351] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-01 03:21:57,566] [pool-1-thread-4] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-07-01 03:21:57,778] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-01 03:21:57,928] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-01 03:21:58,005] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-01 03:21:58,076] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-01 03:21:58,150] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-01 03:21:58,838] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-01 03:21:58,884] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-01 03:21:59,004] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-07-01 03:21:59,072] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-07-01 03:21:59,098] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-01 03:21:59,163] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-07-01 03:21:59,218] [pool-1-thread-6] Used files list does not include base file [testng] [2024-07-01 03:21:59,468] [pool-1-thread-3] Initializing /data/thomas/test.tif: [testng] [2024-07-01 03:21:59,571] [pool-1-thread-10] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-07-01 03:21:59,615] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-07-01 03:21:59,672] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-01 03:22:00,372] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-01 03:22:00,814] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-01 03:22:01,056] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:01,141] [pool-1-thread-7] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-07-01 03:22:01,395] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-01 03:22:01,420] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-01 03:22:01,719] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-01 03:22:03,216] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-01 03:22:03,263] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-01 03:22:03,331] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-01 03:22:03,413] [pool-1-thread-4] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-07-01 03:22:03,895] [pool-1-thread-6] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-01 03:22:04,305] [pool-1-thread-5] Initializing /data/samples/zserSixteen.stk: [testng] [2024-07-01 03:22:04,632] [pool-1-thread-9] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-01 03:22:04,801] [pool-1-thread-5] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-01 03:22:04,940] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-07-01 03:22:07,734] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-01 03:22:07,968] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-07-01 03:22:08,267] [pool-1-thread-10] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-01 03:22:09,138] [pool-1-thread-9] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-01 03:22:09,527] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:09,763] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-07-01 03:22:09,902] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-01 03:22:10,695] [pool-1-thread-3] Initializing /data/dave/Z Series.stk: [testng] [2024-07-01 03:22:11,190] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-01 03:22:11,543] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-01 03:22:12,235] [pool-1-thread-6] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-07-01 03:22:12,532] [pool-1-thread-1] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-07-01 03:22:12,601] [pool-1-thread-4] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-07-01 03:22:13,400] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-01 03:22:13,596] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-01 03:22:13,934] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-01 03:22:14,380] [pool-1-thread-6] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-01 03:22:17,660] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-01 03:22:17,690] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-01 03:22:18,033] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:18,244] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:18,406] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-01 03:22:19,137] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-07-01 03:22:19,200] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-01 03:22:19,314] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-01 03:22:19,372] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-07-01 03:22:19,890] [pool-1-thread-3] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-07-01 03:22:20,036] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-01 03:22:20,256] [pool-1-thread-2] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-01 03:22:20,620] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-01 03:22:23,219] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:23,290] [pool-1-thread-10] Initializing /data/josh/2101to600e.stk: [testng] [2024-07-01 03:22:24,840] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-07-01 03:22:24,894] [pool-1-thread-12] Initializing /data/grant/X.STK: [testng] [2024-07-01 03:22:25,317] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-07-01 03:22:25,497] [pool-1-thread-4] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-01 03:22:25,791] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-07-01 03:22:26,345] [pool-1-thread-3] Initializing /data/samples/10xcalib.tif: [testng] [2024-07-01 03:22:26,710] [pool-1-thread-3] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-07-01 03:22:26,848] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-07-01 03:22:27,122] [pool-1-thread-12] Initializing /data/samples/diatoms3d.stk: [testng] [2024-07-01 03:22:27,423] [pool-1-thread-12] Initializing /data/david/tl4.tif: [testng] [2024-07-01 03:22:27,828] [pool-1-thread-4] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-07-01 03:22:28,174] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-01 03:22:28,243] [pool-1-thread-11] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-01 03:22:28,633] [pool-1-thread-10] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-01 03:22:28,999] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-01 03:22:29,753] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-01 03:22:30,144] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-01 03:22:30,258] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:30,328] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-07-01 03:22:30,474] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-07-01 03:22:31,687] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:31,750] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-01 03:22:32,359] [pool-1-thread-2] Initializing /data/ascb/golgi marker.tif: [testng] [2024-07-01 03:22:32,561] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-01 03:22:33,055] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-01 03:22:33,512] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-07-01 03:22:33,615] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-01 03:22:33,638] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-07-01 03:22:33,809] [pool-1-thread-2] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-01 03:22:34,281] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-07-01 03:22:34,749] [pool-1-thread-11] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-07-01 03:22:34,811] [pool-1-thread-7] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-01 03:22:34,909] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-01 03:22:34,968] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-07-01 03:22:36,097] [pool-1-thread-4] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-07-01 03:22:36,231] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-07-01 03:22:36,434] [pool-1-thread-11] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-07-01 03:22:51,605] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:51,670] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-01 03:22:53,620] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-01 03:22:53,747] [pool-1-thread-7] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-01 03:22:54,897] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-01 03:22:54,992] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-01 03:22:55,357] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-07-01 03:22:55,688] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-01 03:22:56,224] [pool-1-thread-10] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-07-01 03:22:56,337] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-07-01 03:22:56,388] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-01 03:22:56,441] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-01 03:22:56,535] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-01 03:22:56,814] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-01 03:22:57,711] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-07-01 03:22:57,763] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-07-01 03:22:57,970] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-07-01 03:22:59,231] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-01 03:22:59,281] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-01 03:22:59,623] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-07-01 03:22:59,676] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-01 03:22:59,787] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-07-01 03:22:59,851] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-01 03:22:59,871] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-07-01 03:23:00,828] [pool-1-thread-10] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-07-01 03:23:01,469] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-07-01 03:23:01,930] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-01 03:23:02,067] [pool-1-thread-6] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-07-01 03:23:03,085] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-01 03:23:03,480] [pool-1-thread-2] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-07-01 03:23:03,560] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-01 03:23:04,094] [pool-1-thread-10] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-01 03:23:04,293] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-07-01 03:23:04,341] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-01 03:23:04,708] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-07-01 03:23:04,955] [pool-1-thread-11] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-01 03:23:05,998] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-01 03:23:10,486] [pool-1-thread-2] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-07-01 03:23:10,678] [pool-1-thread-7] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-07-01 03:23:10,857] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-07-01 03:23:11,037] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-01 03:23:11,676] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-07-01 03:23:11,748] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-01 03:23:12,293] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-07-01 03:23:12,359] [pool-1-thread-12] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-01 03:23:12,515] [pool-1-thread-6] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-01 03:23:12,639] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-07-01 03:23:12,696] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-01 03:23:12,925] [pool-1-thread-8] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-01 03:23:13,750] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-01 03:23:14,225] [pool-1-thread-7] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-07-01 03:23:14,391] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:23:14,940] [pool-1-thread-8] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-07-01 03:23:15,689] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-01 03:23:18,169] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-07-01 03:23:19,026] [pool-1-thread-7] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-07-01 03:23:19,523] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:23:19,576] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-01 03:23:19,634] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-01 03:23:19,762] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-01 03:23:20,245] [pool-1-thread-7] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-01 03:23:20,379] [pool-1-thread-8] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-01 03:23:20,589] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-01 03:23:20,763] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-01 03:23:21,034] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-01 03:23:21,109] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-01 03:23:21,166] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-01 03:23:21,642] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-01 03:23:21,701] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-07-01 03:23:21,757] [pool-1-thread-12] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 minutes 35 seconds Finished: SUCCESS