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Started by upstream project "BIOFORMATS-test-repo" build number 108 originally caused by: Started by upstream project "Trigger" build number 120 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins779709577755856804.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_16796_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:25:16,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:25:16,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:25:16,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:25:16,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:25:16,561 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:25:16,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:25:16,565 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:25:16,569 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:25:16,570 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 03:25:16,576 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 03:25:16,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 1001 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-01 03:25:16,622] [main] java.version = 1.8.0_342 [testng] 03:25:16,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:25:16,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:16,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-01_03-25-16.log] [testng] 03:25:16,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-01 03:25:16,762] [main] testng.directory = /data [testng] [2024-07-01 03:25:16,763] [main] testng.configDirectory = /config [testng] [2024-07-01 03:25:16,805] [main] testng.multiplier = 1.0 [testng] [2024-07-01 03:25:16,806] [main] testng.in-memory = false [testng] [2024-07-01 03:25:16,806] [main] testng.allow-missing = false [testng] [2024-07-01 03:25:16,807] [main] user.language = fr [testng] [2024-07-01 03:25:16,807] [main] user.country = FR [testng] [2024-07-01 03:25:16,807] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-01 03:25:18,390] [main] ---------------------------------------- [testng] [2024-07-01 03:25:18,390] [main] Total files: 19 [testng] [2024-07-01 03:25:18,391] [main] Scan time: 1.583 s (83 ms/file) [testng] [2024-07-01 03:25:18,391] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-01 03:25:21,716] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 03:25:21,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:25:21,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:21,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-01_03-25-21.log] [testng] 03:25:21,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f561111 - End of configuration. [testng] [2024-07-01 03:25:21,836] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 03:25:21,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:25:21,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:21,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-01_03-25-21.log] [testng] 03:25:21,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46dd3e2e - End of configuration. [testng] [2024-07-01 03:25:22,078] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 03:25:22,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:25:22,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-01_03-25-22.log] [testng] 03:25:22,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30366930 - End of configuration. [testng] [2024-07-01 03:25:22,159] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 03:25:22,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:25:22,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-01_03-25-22.log] [testng] 03:25:22,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e56cd36 - End of configuration. [testng] [2024-07-01 03:25:22,210] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 03:25:22,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:25:22,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-01_03-25-22.log] [testng] 03:25:22,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76930c7a - End of configuration. [testng] [2024-07-01 03:25:22,350] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW: [testng] 03:25:22,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:25:22,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-01_03-25-22.log] [testng] 03:25:22,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@178b8206 - End of configuration. [testng] [2024-07-01 03:25:22,655] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW: [testng] 03:25:22,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:25:22,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-01_03-25-22.log] [testng] 03:25:22,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b09c124 - End of configuration. [testng] [2024-07-01 03:25:22,743] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 03:25:22,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:25:22,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-01_03-25-22.log] [testng] 03:25:22,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771160ed - End of configuration. [testng] [2024-07-01 03:25:22,782] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 03:25:22,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:25:22,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-01_03-25-22.log] [testng] 03:25:22,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8294b9 - End of configuration. [testng] [2024-07-01 03:25:22,860] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW: [testng] 03:25:22,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:25:22,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:22,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-01_03-25-22.log] [testng] 03:25:22,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration. [testng] [2024-07-01 03:25:23,691] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 03:25:23,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:25:23,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:23,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-01_03-25-23.log] [testng] 03:25:23,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15903fda - End of configuration. [testng] [2024-07-01 03:25:23,835] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 03:25:23,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:25:23,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:25:23,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-01_03-25-23.log] [testng] 03:25:23,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b19f54c - End of configuration. [testng] [2024-07-01 03:25:39,855] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-07-01 03:25:39,898] [pool-1-thread-2] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-07-01 03:25:39,963] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-07-01 03:25:40,023] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-07-01 03:25:40,063] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-07-01 03:25:40,128] [pool-1-thread-3] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-07-01 03:25:40,186] [pool-1-thread-11] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS