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Started by upstream project "BIOFORMATS-test-repo" build number 11 originally caused by: Started by upstream project "Trigger" build number 14 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13705809960289760163.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_1695_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:18:32,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:18:32,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:18:32,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:18:32,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:18:32,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:18:32,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:18:32,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:18:32,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:18:32,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:18:32,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:18:32,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:18:32,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:18:32,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:18:32,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:18:32,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:18:32,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:18:32,948 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:18:32,948 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:18:32,948 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:18:32,949 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:18:32,949 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:18:32,950 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:18:32,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-25 01:18:32,961] [main] java.version = 1.8.0_342 [testng] 01:18:32,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:18:32,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:33,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_01-18-32.log] [testng] 01:18:33,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-25 01:18:33,017] [main] testng.directory = /data [testng] [2024-03-25 01:18:33,017] [main] testng.configDirectory = /config [testng] [2024-03-25 01:18:33,030] [main] testng.multiplier = 1.0 [testng] [2024-03-25 01:18:33,031] [main] testng.in-memory = false [testng] [2024-03-25 01:18:33,031] [main] testng.allow-missing = false [testng] [2024-03-25 01:18:33,031] [main] user.language = fr [testng] [2024-03-25 01:18:33,031] [main] user.country = FR [testng] [2024-03-25 01:18:33,031] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-25 01:27:00,196] [main] ---------------------------------------- [testng] [2024-03-25 01:27:00,197] [main] Total files: 7329 [testng] [2024-03-25 01:27:00,197] [main] Scan time: 507.165 s (69 ms/file) [testng] [2024-03-25 01:27:00,197] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-25 01:31:48,543] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 01:31:48,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:48,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_01-31-48.log] [testng] 01:31:48,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6634b - End of configuration. [testng] [2024-03-25 01:31:48,631] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 01:31:48,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:48,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-25_01-31-48.log] [testng] 01:31:48,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a76229 - End of configuration. [testng] [2024-03-25 01:31:48,683] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 01:31:48,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:48,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-25_01-31-48.log] [testng] 01:31:48,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4597c891 - End of configuration. [testng] [2024-03-25 01:31:48,701] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 01:31:48,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:48,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-25_01-31-48.log] [testng] 01:31:48,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a985f86 - End of configuration. [testng] [2024-03-25 01:31:48,802] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 01:31:48,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:48,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_01-31-48.log] [testng] 01:31:48,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29331f4a - End of configuration. [testng] [2024-03-25 01:31:48,889] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 01:31:48,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:48,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_01-31-48.log] [testng] 01:31:48,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f482f7d - End of configuration. [testng] [2024-03-25 01:31:48,954] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 01:31:48,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:48,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:48,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_01-31-48.log] [testng] 01:31:48,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9e589e - End of configuration. [testng] [2024-03-25 01:31:49,062] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 01:31:49,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:49,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:49,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_01-31-49.log] [testng] 01:31:49,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f51f116 - End of configuration. [testng] [2024-03-25 01:31:49,213] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 01:31:49,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:49,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:49,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_01-31-49.log] [testng] 01:31:49,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6ff18f - End of configuration. [testng] [2024-03-25 01:31:49,325] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 01:31:49,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:49,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:49,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_01-31-49.log] [testng] 01:31:49,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bfc9a3 - End of configuration. [testng] [2024-03-25 01:31:49,387] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 01:31:49,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:49,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:49,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_01-31-49.log] [testng] 01:31:49,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db40c18 - End of configuration. [testng] [2024-03-25 01:31:50,380] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 01:31:50,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:50,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:50,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_01-31-50.log] [testng] 01:31:50,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c5ce407 - End of configuration. [testng] [2024-03-25 01:31:53,147] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-25 01:31:55,344] [pool-1-thread-1] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-03-25 01:31:55,466] [pool-1-thread-11] Initializing /data/josh/2101to600astk.stk: [testng] [2024-03-25 01:32:06,017] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:06,113] [pool-1-thread-6] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-25 01:32:06,331] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:06,448] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:06,576] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-25 01:32:06,779] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-25 01:32:07,087] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-25 01:32:08,431] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-03-25 01:32:08,949] [pool-1-thread-10] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-25 01:32:09,865] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-25 01:32:10,034] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-25 01:32:10,277] [pool-1-thread-1] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-25 01:32:10,595] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-25 01:32:11,614] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-03-25 01:32:11,838] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-25 01:32:12,646] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-25 01:32:12,854] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-25 01:32:12,972] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-25 01:32:13,747] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-25 01:32:13,983] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-25 01:32:14,177] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-25 01:32:14,660] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-25 01:32:14,803] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-25 01:32:14,820] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-25 01:32:15,314] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-03-25 01:32:16,120] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:16,334] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-03-25 01:32:16,625] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-25 01:32:16,935] [pool-1-thread-9] Initializing /data/thomas/test.tif: [testng] [2024-03-25 01:32:17,442] [pool-1-thread-3] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-25 01:32:17,652] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-03-25 01:32:17,973] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-25 01:32:18,888] [pool-1-thread-9] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-25 01:32:19,859] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-25 01:32:20,788] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:21,022] [pool-1-thread-7] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-03-25 01:32:23,036] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-25 01:32:23,205] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-25 01:32:23,236] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-25 01:32:26,719] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-25 01:32:26,937] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-25 01:32:28,233] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-25 01:32:28,444] [pool-1-thread-4] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-03-25 01:32:28,705] [pool-1-thread-5] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-25 01:32:29,141] [pool-1-thread-8] Initializing /data/samples/zserSixteen.stk: [testng] [2024-03-25 01:32:30,134] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-25 01:32:30,428] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-25 01:32:30,832] [pool-1-thread-6] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-25 01:32:33,745] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-25 01:32:33,897] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-25 01:32:34,122] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-25 01:32:35,639] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-25 01:32:36,710] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:37,173] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-25 01:32:38,857] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-25 01:32:40,391] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-25 01:32:40,567] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] [2024-03-25 01:32:40,693] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-25 01:32:41,621] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-03-25 01:32:41,859] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-25 01:32:43,047] [pool-1-thread-2] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-25 01:32:43,719] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-25 01:32:44,300] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-25 01:32:44,946] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-25 01:32:46,191] [pool-1-thread-5] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-25 01:32:51,935] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-25 01:32:52,114] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-25 01:32:52,848] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:53,536] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:32:54,921] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-25 01:32:55,182] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-03-25 01:32:55,536] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-25 01:32:55,562] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-25 01:32:56,505] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-25 01:32:58,457] [pool-1-thread-8] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-25 01:32:58,754] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-25 01:32:59,468] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-25 01:33:00,215] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-25 01:33:04,553] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:33:04,917] [pool-1-thread-4] Initializing /data/josh/2101to600e.stk: [testng] [2024-03-25 01:33:07,283] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-03-25 01:33:07,575] [pool-1-thread-8] Initializing /data/grant/X.STK: [testng] [2024-03-25 01:33:08,690] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-25 01:33:09,456] [pool-1-thread-7] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-25 01:33:10,485] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-25 01:33:11,135] [pool-1-thread-5] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-25 01:33:12,252] [pool-1-thread-6] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-03-25 01:33:12,561] [pool-1-thread-8] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-25 01:33:13,315] [pool-1-thread-5] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-25 01:33:14,910] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2024-03-25 01:33:15,747] [pool-1-thread-5] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-25 01:33:16,723] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-25 01:33:17,114] [pool-1-thread-4] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-25 01:33:18,129] [pool-1-thread-10] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-25 01:33:18,341] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-25 01:33:18,609] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-25 01:33:19,129] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-25 01:33:19,740] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-25 01:33:20,737] [pool-1-thread-5] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-25 01:33:21,258] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-25 01:33:22,177] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:33:22,485] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-25 01:33:22,838] [pool-1-thread-4] Initializing /data/ascb/golgi marker.tif: [testng] [2024-03-25 01:33:23,629] [pool-1-thread-9] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-25 01:33:24,479] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-25 01:33:25,166] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-03-25 01:33:25,482] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-25 01:33:25,493] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-25 01:33:25,716] [pool-1-thread-4] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-25 01:33:26,761] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-03-25 01:33:27,127] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-03-25 01:33:27,835] [pool-1-thread-6] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-25 01:33:29,023] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-25 01:33:29,217] [pool-1-thread-10] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-03-25 01:33:30,725] [pool-1-thread-2] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-25 01:33:31,474] [pool-1-thread-11] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-25 01:33:31,933] [pool-1-thread-8] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-03-25 01:34:22,918] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:34:23,311] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-25 01:34:28,721] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-25 01:34:29,121] [pool-1-thread-7] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-25 01:34:34,783] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-25 01:34:38,224] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-25 01:34:38,643] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-25 01:34:40,158] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-25 01:34:41,204] [pool-1-thread-2] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-25 01:34:42,378] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-03-25 01:34:44,072] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-25 01:34:44,564] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-25 01:34:45,904] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-25 01:34:46,765] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-25 01:34:50,825] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-25 01:34:55,337] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-25 01:34:56,124] [pool-1-thread-7] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-25 01:34:59,324] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-25 01:34:59,769] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-25 01:35:01,817] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-25 01:35:02,658] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-25 01:35:05,147] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-25 01:35:05,711] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-25 01:35:06,210] [pool-1-thread-2] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-25 01:35:11,269] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-25 01:35:11,826] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-03-25 01:35:14,828] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-25 01:35:19,540] [pool-1-thread-8] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-25 01:35:22,650] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-25 01:35:23,537] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-25 01:35:25,653] [pool-1-thread-10] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-25 01:35:27,521] [pool-1-thread-2] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-25 01:35:27,891] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-03-25 01:35:28,356] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-25 01:35:28,779] [pool-1-thread-5] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-25 01:35:30,016] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-25 01:35:31,050] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-25 01:35:34,451] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-25 01:35:35,332] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-25 01:35:36,208] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-03-25 01:35:36,910] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-25 01:35:38,972] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-03-25 01:35:39,361] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-25 01:35:40,332] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-25 01:35:42,887] [pool-1-thread-8] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-25 01:35:44,175] [pool-1-thread-5] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-25 01:35:46,389] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-25 01:35:46,920] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-25 01:35:47,809] [pool-1-thread-11] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-25 01:35:48,221] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-25 01:35:51,023] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-25 01:35:53,263] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:35:53,965] [pool-1-thread-11] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-03-25 01:35:55,984] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-25 01:35:58,376] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-25 01:36:04,921] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-25 01:36:07,428] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:36:07,919] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-25 01:36:11,003] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-25 01:36:14,064] [pool-1-thread-12] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-25 01:36:15,983] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-25 01:36:17,374] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-25 01:36:19,677] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-25 01:36:20,576] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-25 01:36:21,036] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-25 01:36:23,224] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-25 01:36:24,834] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-25 01:36:25,257] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-25 01:36:25,713] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-25 01:36:25,714] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 65 minutes 24 seconds Finished: SUCCESS