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Started by upstream project "BIOFORMATS-test-repo" build number 110
originally caused by:
 Started by upstream project "Trigger" build number 123
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15001616926743964036.sh
+ '[' li-flim = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17070_merge_ci -v /uod/idr/repos/curated/li-flim:/data -v /uod/idr-scratch/merge-ci/curated/li-flim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:28:34,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:28:34,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:28:34,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:28:34,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:28:34,256 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:28:34,256 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:28:34,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:28:34,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:28:34,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:28:34,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:28:34,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:28:34,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:28:34,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:28:34,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:28:34,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:28:34,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:28:34,477 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:28:34,477 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:28:34,477 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:28:34,478 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:28:34,478 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:28:34,479 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:28:34,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 222 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-03 01:28:34,489] [main] java.version = 17.0.2
   [testng] 01:28:34,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:28:34,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:34,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-03_01-28-34.log]
   [testng] 01:28:34,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-03 01:28:34,547] [main] testng.directory = /data
   [testng] [2024-07-03 01:28:34,547] [main] testng.configDirectory = /config
   [testng] [2024-07-03 01:28:34,557] [main] testng.multiplier = 1.0
   [testng] [2024-07-03 01:28:34,558] [main] testng.in-memory = false
   [testng] [2024-07-03 01:28:34,559] [main] testng.allow-missing = false
   [testng] [2024-07-03 01:28:34,559] [main] user.language = en
   [testng] [2024-07-03 01:28:34,559] [main] user.country = ${user.country}
   [testng] [2024-07-03 01:28:34,559] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-03 01:28:35,844] [main] ----------------------------------------
   [testng] [2024-07-03 01:28:35,845] [main] Total files: 28
   [testng] [2024-07-03 01:28:35,845] [main] Scan time: 1.285 s (45 ms/file)
   [testng] [2024-07-03 01:28:35,845] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 26 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-03 01:28:39,169] [pool-1-thread-1] Initializing /data/qian/vxl-mbad-737-1um-01687.fli: 
   [testng] 01:28:39,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:28:39,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-03_01-28-39.log]
   [testng] 01:28:39,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650035d8 - End of configuration.
   [testng] [2024-07-03 01:28:39,277] [pool-1-thread-12] Initializing /data/samples/reference-simple.fli: 
   [testng] 01:28:39,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:28:39,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-03_01-28-39.log]
   [testng] 01:28:39,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47da6e88 - End of configuration.
   [testng] [2024-07-03 01:28:39,315] [pool-1-thread-11] Initializing /data/jean-marie/Flimdata/C Reference fluorescein4ns-CFPbpFILTER.fli: 
   [testng] 01:28:39,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:28:39,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-03_01-28-39.log]
   [testng] 01:28:39,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590cecb5 - End of configuration.
   [testng] [2024-07-03 01:28:39,389] [pool-1-thread-10] Initializing /data/rharkes/2018-11-28_10.04.10_sample_Rhodamine6G.fli: 
   [testng] 01:28:39,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:28:39,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-03_01-28-39.log]
   [testng] 01:28:39,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@246d1b91 - End of configuration.
   [testng] [2024-07-03 01:28:39,446] [pool-1-thread-9] Initializing /data/jean-marie/Flimdata/lif_E Sample Typical-Dicot-Root-Zserie-CSU22.fli: 
   [testng] 01:28:39,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:28:39,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-03_01-28-39.log]
   [testng] 01:28:39,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47603fe9 - End of configuration.
   [testng] [2024-07-03 01:28:39,492] [pool-1-thread-8] Initializing /data/LambertInstruments/cp70-siso_Lambert HS1000_1875-ST-250(lsb).fli: 
   [testng] 01:28:39,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:28:39,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-03_01-28-39.log]
   [testng] 01:28:39,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a9f95c - End of configuration.
   [testng] [2024-07-03 01:28:39,535] [pool-1-thread-7] Initializing /data/LambertInstruments/LambertInstruments-fli-2/15-8bit_CameraSimulator_LI-Camera-Simulator.fli: 
   [testng] 01:28:39,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:28:39,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-03_01-28-39.log]
   [testng] 01:28:39,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46489b8 - End of configuration.
   [testng] [2024-07-03 01:28:39,569] [pool-1-thread-6] Initializing /data/jean-marie/Flimdata/D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli: 
   [testng] 01:28:39,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:28:39,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-03_01-28-39.log]
   [testng] 01:28:39,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39bea123 - End of configuration.
   [testng] [2024-07-03 01:28:39,609] [pool-1-thread-5] Initializing /data/samples/sample-simple.fli: 
   [testng] 01:28:39,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:28:39,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-03_01-28-39.log]
   [testng] 01:28:39,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7197d0c7 - End of configuration.
   [testng] [2024-07-03 01:28:39,623] [pool-1-thread-4] Initializing /data/jean-marie/IMG_4935.JPG: 
   [testng] 01:28:39,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:28:39,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-03_01-28-39.log]
   [testng] 01:28:39,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@710540f3 - End of configuration.
   [testng] [2024-07-03 01:28:39,953] [pool-1-thread-3] Initializing /data/samples/reference-extended.fli: 
   [testng] 01:28:39,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:28:39,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:39,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-03_01-28-39.log]
   [testng] 01:28:39,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61acc608 - End of configuration.
   [testng] [2024-07-03 01:28:40,002] [pool-1-thread-2] Initializing /data/jean-marie/Flimdata/E Reference fluorescein4ns-CSU22.fli: 
   [testng] 01:28:40,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:28:40,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:28:40,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-03_01-28-40.log]
   [testng] 01:28:40,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42f5a7a9 - End of configuration.
   [testng] [2024-07-03 01:28:41,655] [pool-1-thread-12] Initializing /data/jean-marie/Flimdata/lif_C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli: 
   [testng] [2024-07-03 01:28:41,706] [pool-1-thread-5] Initializing /data/LambertInstruments/cp70-euresys_Lambert HS1000_1875-ST-250(msb).fli: 
   [testng] [2024-07-03 01:28:41,742] [pool-1-thread-3] Initializing /data/LambertInstruments/LambertInstruments-fli-2/16-8bit_CameraSimulator_LI-Camera-Simulator.fli: 
   [testng] [2024-07-03 01:28:41,795] [pool-1-thread-9] Initializing /data/jean-marie/Flimdata/lif_D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli: 
   [testng] [2024-07-03 01:28:43,014] [pool-1-thread-7] Initializing /data/jean-marie/Flimdata/E Sample Typical-Dicot-Root-Zserie-CSU22.fli: 
   [testng] [2024-07-03 01:28:43,062] [pool-1-thread-10] Initializing /data/jean-marie/IMG_4936.JPG: 
   [testng] [2024-07-03 01:28:43,425] [pool-1-thread-8] Initializing /data/jean-marie/Flimdata/A Reference fluorescein4ns-CFPbpFILTER.fli: 
   [testng] [2024-07-03 01:28:43,648] [pool-1-thread-2] Initializing /data/jean-marie/Flimdata/A Sample CFP-and-CFPYFP-cells-CFPbpFILTER.fli: 
   [testng] [2024-07-03 01:28:43,691] [pool-1-thread-1] Initializing /data/qa-17164/ExampleFile - LiFlimReader fix ExposureTime .fli: 
   [testng] [2024-07-03 01:28:44,092] [pool-1-thread-3] Initializing /data/samples/lifetime-simple.fli: 
   [testng] [2024-07-03 01:28:44,329] [pool-1-thread-9] Initializing /data/samples/lifetime-extended.fli: 
   [testng] [2024-07-03 01:28:44,425] [pool-1-thread-3] Initializing /data/jean-marie/Flimdata/lif_A Sample CFP-and-CFPYFP-cells-CFPbpFILTER.fli: 
   [testng] [2024-07-03 01:28:44,498] [pool-1-thread-12] Initializing /data/samples/sample-extended.fli: 
   [testng] [2024-07-03 01:28:44,545] [pool-1-thread-1] Initializing /data/jean-marie/Flimdata/C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1378, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS