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Started by upstream project "BIOFORMATS-test-repo" build number 110 originally caused by: Started by upstream project "Trigger" build number 123 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2112219053612043060.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17080_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:31:12,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:31:12,099 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:31:12,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:12,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:12,101 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:12,101 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:12,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:12,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:12,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:12,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:12,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:12,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:12,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:12,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:12,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:12,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:12,300 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:12,301 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:12,301 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:12,301 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:12,302 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:31:12,303 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:31:12,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-03 01:31:12,328] [main] java.version = 17.0.2 [testng] 01:31:12,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:12,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:12,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-03_01-31-12.log] [testng] 01:31:12,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-03 01:31:12,383] [main] testng.directory = /data [testng] [2024-07-03 01:31:12,383] [main] testng.configDirectory = /config [testng] [2024-07-03 01:31:12,392] [main] testng.multiplier = 1.0 [testng] [2024-07-03 01:31:12,393] [main] testng.in-memory = false [testng] [2024-07-03 01:31:12,393] [main] testng.allow-missing = false [testng] [2024-07-03 01:31:12,393] [main] user.language = en [testng] [2024-07-03 01:31:12,393] [main] user.country = ${user.country} [testng] [2024-07-03 01:31:12,393] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-03 01:31:12,750] [main] ---------------------------------------- [testng] [2024-07-03 01:31:12,750] [main] Total files: 25 [testng] [2024-07-03 01:31:12,750] [main] Scan time: 0.356 s (14 ms/file) [testng] [2024-07-03 01:31:12,750] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-03 01:31:14,478] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:31:14,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:14,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-03_01-31-14.log] [testng] 01:31:14,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146058ca - End of configuration. [testng] [2024-07-03 01:31:14,540] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] 01:31:14,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:14,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-03_01-31-14.log] [testng] 01:31:14,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration. [testng] [2024-07-03 01:31:14,591] [pool-1-thread-11] Initializing /data/jqd/32bit.pict: [testng] 01:31:14,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:14,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-03_01-31-14.log] [testng] 01:31:14,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df9fdb - End of configuration. [testng] [2024-07-03 01:31:14,632] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT: [testng] 01:31:14,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:14,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-03_01-31-14.log] [testng] 01:31:14,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64a0f473 - End of configuration. [testng] [2024-07-03 01:31:14,657] [pool-1-thread-9] Initializing /data/misc/planet.png: [testng] 01:31:14,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:14,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-03_01-31-14.log] [testng] 01:31:14,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bc0300d - End of configuration. [testng] [2024-07-03 01:31:14,666] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 01:31:14,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:14,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-03_01-31-14.log] [testng] 01:31:14,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b41ea6 - End of configuration. [testng] [2024-07-03 01:31:14,680] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:31:14,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:14,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-03_01-31-14.log] [testng] 01:31:14,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@722e9eb6 - End of configuration. [testng] [2024-07-03 01:31:14,723] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:31:14,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:14,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-03_01-31-14.log] [testng] 01:31:14,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5014699 - End of configuration. [testng] [2024-07-03 01:31:14,734] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:31:14,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:14,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-03_01-31-14.log] [testng] 01:31:14,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0ab901 - End of configuration. [testng] [2024-07-03 01:31:14,746] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:31:14,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:14,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-03_01-31-14.log] [testng] 01:31:14,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5a1c71 - End of configuration. [testng] [2024-07-03 01:31:14,929] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:31:14,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:14,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-03_01-31-14.log] [testng] 01:31:14,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70c3f091 - End of configuration. [testng] [2024-07-03 01:31:14,949] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] 01:31:14,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:14,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:14,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-03_01-31-14.log] [testng] 01:31:14,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8d263e - End of configuration. [testng] [2024-07-03 01:31:16,405] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-07-03 01:31:16,415] [pool-1-thread-10] Initializing /data/misc/swlogo.pict: [testng] [2024-07-03 01:31:16,448] [pool-1-thread-6] Initializing /data/brian/images/VENUS.pct: [testng] [2024-07-03 01:31:16,489] [pool-1-thread-3] Initializing /data/brian/images/GRN.PCT: [testng] [2024-07-03 01:31:16,527] [pool-1-thread-8] Initializing /data/brian/images/WHT.PCT: [testng] [2024-07-03 01:31:16,562] [pool-1-thread-9] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-07-03 01:31:16,844] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-07-03 01:31:16,987] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-07-03 01:31:17,002] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-07-03 01:31:17,014] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] [2024-07-03 01:31:17,149] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: [testng] [2024-07-03 01:31:17,217] [pool-1-thread-5] Initializing /data/brian/images/YEL.PCT: [testng] [2024-07-03 01:31:17,239] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS