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Started by upstream project "BIOFORMATS-test-repo" build number 11 originally caused by: Started by upstream project "Trigger" build number 14 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins7261050783285443020.sh + '[' fuji = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_1712_merge_ci -v /uod/idr/repos/curated/fuji:/data -v /uod/idr-scratch/merge-ci/curated/fuji:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:32:55,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:32:55,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:32:55,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:32:55,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:32:55,824 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:32:55,825 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:32:55,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:32:55,827 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:32:55,827 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:32:55,829 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:32:55,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 491 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-25 01:32:55,849] [main] java.version = 1.8.0_342 [testng] 01:32:55,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:32:55,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:55,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_01-32-55.log] [testng] 01:32:55,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-25 01:32:55,954] [main] testng.directory = /data [testng] [2024-03-25 01:32:55,955] [main] testng.configDirectory = /config [testng] [2024-03-25 01:32:55,969] [main] testng.multiplier = 1.0 [testng] [2024-03-25 01:32:55,970] [main] testng.in-memory = false [testng] [2024-03-25 01:32:55,970] [main] testng.allow-missing = false [testng] [2024-03-25 01:32:55,970] [main] user.language = fr [testng] [2024-03-25 01:32:55,970] [main] user.country = FR [testng] [2024-03-25 01:32:55,970] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-25 01:33:01,088] [main] ---------------------------------------- [testng] [2024-03-25 01:33:01,089] [main] Total files: 24 [testng] [2024-03-25 01:33:01,089] [main] Scan time: 5.118 s (213 ms/file) [testng] [2024-03-25 01:33:01,089] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 9 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-25 01:33:08,967] [pool-1-thread-1] Initializing /data/bernie/101110_Oligos_16hour/101110_Oligos_16hour.tif: [testng] 01:33:08,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:33:08,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:08,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_01-33-08.log] [testng] 01:33:08,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cac3314 - End of configuration. [testng] [2024-03-25 01:33:09,417] [pool-1-thread-9] Initializing /data/bernie/101210_Substrate10mi/101210_Substrate10mi.tif: [testng] 01:33:09,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:33:09,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:09,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_01-33-09.log] [testng] 01:33:09,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b73869f - End of configuration. [testng] [2024-03-25 01:33:09,900] [pool-1-thread-8] Initializing /data/bernie/080211_Exo_3hours/080211_Exo_3hours.tif: [testng] 01:33:09,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:33:09,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:09,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_01-33-09.log] [testng] 01:33:09,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673cd323 - End of configuration. [testng] [2024-03-25 01:33:10,432] [pool-1-thread-7] Initializing /data/bernie/120411_18hrs/120411_18hrs.tif: [testng] 01:33:10,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:33:10,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:10,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_01-33-10.log] [testng] 01:33:10,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e785b5 - End of configuration. [testng] [2024-03-25 01:33:10,929] [pool-1-thread-6] Initializing /data/bernie/101210_SubstrateTest/101210_SubstrateTest.tif: [testng] 01:33:10,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:33:10,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:10,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_01-33-10.log] [testng] 01:33:10,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63054ff7 - End of configuration. [testng] [2024-03-25 01:33:11,484] [pool-1-thread-5] Initializing /data/venu/TPN_membraneC_1sec.img: [testng] 01:33:11,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:33:11,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:11,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_01-33-11.log] [testng] 01:33:11,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0ffb8e - End of configuration. [testng] [2024-03-25 01:33:11,707] [pool-1-thread-4] Initializing /data/bernie/101110_Oligos_10min/101110_Oligos_10min.tif: [testng] 01:33:11,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:33:11,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:11,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_01-33-11.log] [testng] 01:33:11,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@554a5a2c - End of configuration. [testng] [2024-03-25 01:33:12,140] [pool-1-thread-3] Initializing /data/bernie/070810_20hours/070810_20hours.tif: [testng] 01:33:12,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:33:12,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:12,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_01-33-12.log] [testng] 01:33:12,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56848e78 - End of configuration. [testng] [2024-03-25 01:33:12,639] [pool-1-thread-2] Initializing /data/bernie/090810_18hours/090810_18hours.tif: [testng] 01:33:12,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:33:12,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:12,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_01-33-12.log] [testng] 01:33:12,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17c2b96 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 477, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS