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Started by upstream project "BIOFORMATS-test-repo" build number 110 originally caused by: Started by upstream project "Trigger" build number 123 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins11649734532907768807.sh + '[' nikon-jp2 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17175_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:33:41,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:33:41,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:33:41,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:33:41,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:33:41,571 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:33:41,572 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:33:41,572 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:33:41,572 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:33:41,572 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:33:41,573 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:33:41,573 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 533 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-03 02:33:41,582] [main] java.version = 17.0.2 [testng] 02:33:41,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:33:41,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:41,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-03_02-33-41.log] [testng] 02:33:41,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-03 02:33:41,739] [main] testng.directory = /data [testng] [2024-07-03 02:33:41,739] [main] testng.configDirectory = /config [testng] [2024-07-03 02:33:41,806] [main] testng.multiplier = 1.0 [testng] [2024-07-03 02:33:41,807] [main] testng.in-memory = false [testng] [2024-07-03 02:33:41,808] [main] testng.allow-missing = false [testng] [2024-07-03 02:33:41,808] [main] user.language = en [testng] [2024-07-03 02:33:41,808] [main] user.country = ${user.country} [testng] [2024-07-03 02:33:41,808] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-03 02:33:42,915] [main] ---------------------------------------- [testng] [2024-07-03 02:33:42,915] [main] Total files: 11 [testng] [2024-07-03 02:33:42,915] [main] Scan time: 1.107 s (100 ms/file) [testng] [2024-07-03 02:33:42,915] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-03 02:33:45,135] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif: [testng] 02:33:45,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:33:45,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-03_02-33-45.log] [testng] 02:33:45,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43aae42e - End of configuration. [testng] [2024-07-03 02:33:45,205] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2: [testng] 02:33:45,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:33:45,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-03_02-33-45.log] [testng] 02:33:45,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3973a3af - End of configuration. [testng] [2024-07-03 02:33:45,374] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg: [testng] 02:33:45,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:33:45,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-03_02-33-45.log] [testng] 02:33:45,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da12e9 - End of configuration. [testng] [2024-07-03 02:33:45,438] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: [testng] 02:33:45,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:33:45,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-03_02-33-45.log] [testng] 02:33:45,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2498fd51 - End of configuration. [testng] [2024-07-03 02:33:45,464] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed004.tif: [testng] 02:33:45,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:33:45,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-03_02-33-45.log] [testng] 02:33:45,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1641f0c1 - End of configuration. [testng] [2024-07-03 02:33:45,551] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008R.tif: [testng] 02:33:45,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:33:45,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-03_02-33-45.log] [testng] 02:33:45,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78524a2f - End of configuration. [testng] [2024-07-03 02:33:45,623] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif: [testng] 02:33:45,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:33:45,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-03_02-33-45.log] [testng] 02:33:45,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5094ecb4 - End of configuration. [testng] [2024-07-03 02:33:45,695] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed007.gif: [testng] 02:33:45,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:33:45,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-03_02-33-45.log] [testng] 02:33:45,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d4a3bf - End of configuration. [testng] [2024-07-03 02:33:45,715] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed005.bmp: [testng] 02:33:45,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:33:45,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-03_02-33-45.log] [testng] 02:33:45,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505437bf - End of configuration. [testng] [2024-07-03 02:33:45,728] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif: [testng] 02:33:45,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:33:45,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-03_02-33-45.log] [testng] 02:33:45,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65764a7 - End of configuration. [testng] [2024-07-03 02:33:45,804] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2: [testng] 02:33:45,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:33:45,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:33:45,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-03_02-33-45.log] [testng] 02:33:45,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23673b82 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 seconds Finished: SUCCESS