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Started by upstream project "BIOFORMATS-test-repo" build number 111 originally caused by: Started by upstream project "Trigger" build number 124 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17197093724035796393.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17196_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:54,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:54,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:21:54,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:54,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:54,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:54,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:54,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:54,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:54,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:54,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:54,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:54,533 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:54,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:54,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:54,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:54,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:54,709 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:54,710 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:54,710 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:54,710 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:54,710 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:21:54,711 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:21:54,711 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-04 01:21:54,719] [main] java.version = 21 [testng] 01:21:54,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:54,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:54,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-04_01-21-54.log] [testng] 01:21:54,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-04 01:21:54,764] [main] testng.directory = /data [testng] [2024-07-04 01:21:54,764] [main] testng.configDirectory = /config [testng] [2024-07-04 01:21:54,772] [main] testng.multiplier = 1.0 [testng] [2024-07-04 01:21:54,772] [main] testng.in-memory = false [testng] [2024-07-04 01:21:54,773] [main] testng.allow-missing = false [testng] [2024-07-04 01:21:54,773] [main] user.language = en [testng] [2024-07-04 01:21:54,773] [main] user.country = ${user.country} [testng] [2024-07-04 01:21:54,773] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-04 01:21:55,814] [main] ---------------------------------------- [testng] [2024-07-04 01:21:55,814] [main] Total files: 103 [testng] [2024-07-04 01:21:55,814] [main] Scan time: 1.041 s (10 ms/file) [testng] [2024-07-04 01:21:55,814] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-04 01:22:03,243] [pool-1-thread-1] Initializing /data/jay/dnasample.tif: [testng] 01:22:03,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:03,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-04_01-22-03.log] [testng] 01:22:03,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d04920 - End of configuration. [testng] [2024-07-04 01:22:03,319] [pool-1-thread-12] Initializing /data/jay/DMtest2.dm3: [testng] 01:22:03,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:03,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-04_01-22-03.log] [testng] 01:22:03,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6efd9437 - End of configuration. [testng] [2024-07-04 01:22:03,374] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] 01:22:03,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:03,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-04_01-22-03.log] [testng] 01:22:03,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18349045 - End of configuration. [testng] [2024-07-04 01:22:03,393] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] 01:22:03,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:03,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-04_01-22-03.log] [testng] 01:22:03,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678c12e4 - End of configuration. [testng] [2024-07-04 01:22:03,418] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] 01:22:03,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:03,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-04_01-22-03.log] [testng] 01:22:03,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c028613 - End of configuration. [testng] [2024-07-04 01:22:03,437] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] 01:22:03,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:03,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-04_01-22-03.log] [testng] 01:22:03,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656fbb2c - End of configuration. [testng] [2024-07-04 01:22:03,514] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] 01:22:03,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:03,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-04_01-22-03.log] [testng] 01:22:03,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693e0549 - End of configuration. [testng] [2024-07-04 01:22:03,908] [pool-1-thread-6] Initializing /data/chip/Nanogold-1.dm3: [testng] 01:22:03,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:03,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-04_01-22-03.log] [testng] 01:22:03,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2070a583 - End of configuration. [testng] [2024-07-04 01:22:03,953] [pool-1-thread-5] Initializing /data/qa-7642/8.dm4: [testng] 01:22:03,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:03,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-04_01-22-03.log] [testng] 01:22:03,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55e7b925 - End of configuration. [testng] [2024-07-04 01:22:03,999] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] 01:22:04,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:04,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-04_01-22-04.log] [testng] 01:22:04,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f76c02 - End of configuration. [testng] [2024-07-04 01:22:04,014] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] 01:22:04,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:04,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-04_01-22-04.log] [testng] 01:22:04,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ede508b - End of configuration. [testng] [2024-07-04 01:22:04,052] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 01:22:04,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:04,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-04_01-22-04.log] [testng] 01:22:04,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e76a5eb - End of configuration. [testng] [2024-07-04 01:22:06,352] [pool-1-thread-10] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-07-04 01:22:06,361] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-07-04 01:22:06,725] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-07-04 01:22:06,832] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-07-04 01:22:06,887] [pool-1-thread-10] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-07-04 01:22:07,369] [pool-1-thread-5] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-07-04 01:22:07,591] [pool-1-thread-2] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-07-04 01:22:07,750] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-07-04 01:22:08,130] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-07-04 01:22:08,209] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-07-04 01:22:08,241] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-07-04 01:22:08,576] [pool-1-thread-1] Initializing /data/samples/test-tiles.dm3: [testng] [2024-07-04 01:22:08,727] [pool-1-thread-3] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-07-04 01:22:08,760] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-07-04 01:22:08,968] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-07-04 01:22:10,052] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-07-04 01:22:10,935] [pool-1-thread-9] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-07-04 01:22:11,045] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-07-04 01:22:11,464] [pool-1-thread-4] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-07-04 01:22:11,747] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-07-04 01:22:12,015] [pool-1-thread-10] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-07-04 01:22:12,212] [pool-1-thread-9] Initializing /data/melissa/annotation-test.tif: [testng] [2024-07-04 01:22:12,537] [pool-1-thread-9] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-07-04 01:22:12,768] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-07-04 01:22:12,875] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-07-04 01:22:13,287] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-07-04 01:22:13,856] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-07-04 01:22:14,769] [pool-1-thread-3] Initializing /data/jay/camtest1.dm3: [testng] [2024-07-04 01:22:15,326] [pool-1-thread-10] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-07-04 01:22:15,491] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-07-04 01:22:16,224] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-07-04 01:22:16,347] [pool-1-thread-10] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-07-04 01:22:16,361] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-07-04 01:22:17,956] [pool-1-thread-9] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-07-04 01:22:17,991] [pool-1-thread-2] Initializing /data/jay/dnasample1.dm3: [testng] [2024-07-04 01:22:18,549] [pool-1-thread-6] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-07-04 01:22:18,561] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-07-04 01:22:18,569] [pool-1-thread-9] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-07-04 01:22:18,773] [pool-1-thread-3] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-07-04 01:22:21,839] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-07-04 01:22:22,595] [pool-1-thread-6] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-07-04 01:22:23,097] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-07-04 01:22:23,234] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-07-04 01:22:23,694] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-07-04 01:22:23,907] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-07-04 01:22:25,386] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-07-04 01:22:25,543] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-07-04 01:22:27,544] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-07-04 01:22:27,760] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-07-04 01:22:28,006] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-07-04 01:22:29,555] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-07-04 01:22:30,254] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-07-04 01:22:30,313] [pool-1-thread-3] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-07-04 01:22:30,661] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-07-04 01:22:30,831] [pool-1-thread-8] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-07-04 01:22:30,864] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-07-04 01:22:31,209] [pool-1-thread-7] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-07-04 01:22:31,888] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-07-04 01:22:31,921] [pool-1-thread-5] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-07-04 01:22:32,034] [pool-1-thread-7] Initializing /data/jay/smallerfile.dm3: [testng] [2024-07-04 01:22:32,317] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-07-04 01:22:32,645] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-07-04 01:22:32,660] [pool-1-thread-7] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-07-04 01:22:34,543] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-07-04 01:22:34,799] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-07-04 01:22:34,883] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-07-04 01:22:35,510] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-07-04 01:22:35,591] [pool-1-thread-8] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-07-04 01:22:35,688] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-07-04 01:22:35,786] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-07-04 01:22:35,973] [pool-1-thread-11] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-07-04 01:22:36,224] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-07-04 01:22:36,325] [pool-1-thread-10] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-07-04 01:22:36,366] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-07-04 01:22:37,242] [pool-1-thread-7] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-07-04 01:22:37,476] [pool-1-thread-5] Initializing /data/ofra/lowloss.dm3: [testng] [2024-07-04 01:22:37,600] [pool-1-thread-5] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-07-04 01:22:38,006] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-07-04 01:22:38,045] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-07-04 01:22:38,225] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-07-04 01:22:38,387] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-07-04 01:22:38,614] [pool-1-thread-3] Initializing /data/jay/DMtest.dm3: [testng] [2024-07-04 01:22:38,757] [pool-1-thread-5] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-07-04 01:22:39,890] [pool-1-thread-10] Initializing /data/qa-21761/example.dm4: [testng] [2024-07-04 01:22:39,935] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-07-04 01:22:40,256] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 2 seconds Finished: SUCCESS