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Started by upstream project "BIOFORMATS-test-repo" build number 111 originally caused by: Started by upstream project "Trigger" build number 124 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16985640336676590269.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17218_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:23:46,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:46,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:23:46,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:46,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:46,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:46,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:46,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:46,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:46,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:46,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:46,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:46,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:46,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:46,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:46,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:46,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:46,593 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:46,594 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:46,594 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:46,594 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:46,594 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:23:46,595 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:23:46,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 307 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-04 01:23:46,604] [main] java.version = 21 [testng] 01:23:46,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:46,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:46,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-04_01-23-46.log] [testng] 01:23:46,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-04 01:23:46,684] [main] testng.directory = /data [testng] [2024-07-04 01:23:46,684] [main] testng.configDirectory = /config [testng] [2024-07-04 01:23:46,700] [main] testng.multiplier = 1.0 [testng] [2024-07-04 01:23:46,700] [main] testng.in-memory = false [testng] [2024-07-04 01:23:46,701] [main] testng.allow-missing = false [testng] [2024-07-04 01:23:46,701] [main] user.language = en [testng] [2024-07-04 01:23:46,701] [main] user.country = ${user.country} [testng] [2024-07-04 01:23:46,701] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-04 01:23:47,203] [main] ---------------------------------------- [testng] [2024-07-04 01:23:47,203] [main] Total files: 31 [testng] [2024-07-04 01:23:47,203] [main] Scan time: 0.502 s (16 ms/file) [testng] [2024-07-04 01:23:47,203] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-04 01:23:48,786] [pool-1-thread-1] Initializing /data/curtis/image2.bmp: [testng] 01:23:48,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:48,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-04_01-23-48.log] [testng] 01:23:48,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@658d41f6 - End of configuration. [testng] [2024-07-04 01:23:48,801] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] 01:23:48,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:48,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-04_01-23-48.log] [testng] 01:23:48,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17b2dc67 - End of configuration. [testng] [2024-07-04 01:23:48,819] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 01:23:48,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:48,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-04_01-23-48.log] [testng] 01:23:48,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77c969d - End of configuration. [testng] [2024-07-04 01:23:48,856] [pool-1-thread-10] Initializing /data/curtis/image3.bmp: [testng] 01:23:48,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:48,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-04_01-23-48.log] [testng] 01:23:48,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1667e1c0 - End of configuration. [testng] [2024-07-04 01:23:48,864] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:23:48,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:48,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-04_01-23-48.log] [testng] 01:23:48,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@215205cd - End of configuration. [testng] [2024-07-04 01:23:48,875] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] 01:23:48,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:48,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-04_01-23-48.log] [testng] 01:23:48,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2661ce21 - End of configuration. [testng] [2024-07-04 01:23:48,884] [pool-1-thread-7] Initializing /data/frank/cell_mask_error.bmp: [testng] 01:23:48,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:48,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-04_01-23-48.log] [testng] 01:23:48,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22ea119d - End of configuration. [testng] [2024-07-04 01:23:48,891] [pool-1-thread-6] Initializing /data/brian/images/raw_a.bmp: [testng] 01:23:48,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:48,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-04_01-23-48.log] [testng] 01:23:48,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a10322 - End of configuration. [testng] [2024-07-04 01:23:48,900] [pool-1-thread-5] Initializing /data/stephane/holo0908.bmp: [testng] 01:23:48,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:48,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-04_01-23-48.log] [testng] 01:23:48,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2540d21d - End of configuration. [testng] [2024-07-04 01:23:48,915] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:23:48,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:48,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-04_01-23-48.log] [testng] 01:23:48,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e52e5cb - End of configuration. [testng] [2024-07-04 01:23:48,926] [pool-1-thread-3] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:23:48,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:48,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-04_01-23-48.log] [testng] 01:23:48,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7de60de1 - End of configuration. [testng] [2024-07-04 01:23:48,938] [pool-1-thread-2] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 01:23:48,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:48,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:48,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-04_01-23-48.log] [testng] 01:23:48,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50088c86 - End of configuration. [testng] [2024-07-04 01:23:50,693] [pool-1-thread-10] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-07-04 01:23:50,700] [pool-1-thread-1] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-07-04 01:23:50,712] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-07-04 01:23:50,720] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-07-04 01:23:50,728] [pool-1-thread-12] Initializing /data/big-images/6kx6k-grey.bmp: [testng] [2024-07-04 01:23:50,741] [pool-1-thread-7] Initializing /data/curtis/image4.bmp: [testng] [2024-07-04 01:23:50,772] [pool-1-thread-8] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-07-04 01:23:50,782] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-07-04 01:23:50,790] [pool-1-thread-2] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-07-04 01:23:50,800] [pool-1-thread-11] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-07-04 01:23:51,000] [pool-1-thread-5] Initializing /data/curtis/image5.bmp: [testng] [2024-07-04 01:23:51,066] [pool-1-thread-7] Initializing /data/ticket-12971/foo.bmp: [testng] [2024-07-04 01:23:51,137] [pool-1-thread-5] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2024-07-04 01:23:51,142] [pool-1-thread-10] Initializing /data/bk/ch_00.bmp: [testng] [2024-07-04 01:23:51,208] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-07-04 01:23:51,216] [pool-1-thread-7] Initializing /data/big-images/8kx8k.bmp: [testng] [2024-07-04 01:23:51,318] [pool-1-thread-11] Initializing /data/curtis/image1.bmp: [testng] [2024-07-04 01:23:51,323] [pool-1-thread-4] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2024-07-04 01:23:51,343] [pool-1-thread-3] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS