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Started by upstream project "BIOFORMATS-test-repo" build number 111 originally caused by: Started by upstream project "Trigger" build number 124 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3724197226819842263.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17282_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:03:41,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:03:41,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:03:41,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:03:41,668 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:03:41,669 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:03:41,669 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:03:41,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:03:41,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:03:41,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:03:41,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:03:41,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:03:41,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:03:41,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:03:41,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:41,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:41,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:41,870 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:41,870 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:41,870 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:41,870 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:41,871 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:03:41,871 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:03:41,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-04 02:03:41,880] [main] java.version = 21 [testng] 02:03:41,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:41,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:41,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-04_02-03-41.log] [testng] 02:03:41,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-04 02:03:41,928] [main] testng.directory = /data [testng] [2024-07-04 02:03:41,929] [main] testng.configDirectory = /config [testng] [2024-07-04 02:03:41,937] [main] testng.multiplier = 1.0 [testng] [2024-07-04 02:03:41,938] [main] testng.in-memory = false [testng] [2024-07-04 02:03:41,938] [main] testng.allow-missing = false [testng] [2024-07-04 02:03:41,938] [main] user.language = en [testng] [2024-07-04 02:03:41,938] [main] user.country = ${user.country} [testng] [2024-07-04 02:03:41,938] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-04 02:03:53,192] [main] ---------------------------------------- [testng] [2024-07-04 02:03:53,192] [main] Total files: 268 [testng] [2024-07-04 02:03:53,192] [main] Scan time: 11.254 s (41 ms/file) [testng] [2024-07-04 02:03:53,193] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-04 02:04:03,743] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] 02:04:03,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:04:03,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-04_02-04-03.log] [testng] 02:04:03,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7da3eea6 - End of configuration. [testng] [2024-07-04 02:04:03,766] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] 02:04:03,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:04:03,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-04_02-04-03.log] [testng] 02:04:03,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5897f1e8 - End of configuration. [testng] [2024-07-04 02:04:03,787] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:04:03,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:04:03,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-04_02-04-03.log] [testng] 02:04:03,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120def1a - End of configuration. [testng] [2024-07-04 02:04:03,828] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] 02:04:03,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:04:03,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-04_02-04-03.log] [testng] 02:04:03,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@229caa90 - End of configuration. [testng] [2024-07-04 02:04:03,841] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:04:03,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:04:03,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-04_02-04-03.log] [testng] 02:04:03,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1694b513 - End of configuration. [testng] [2024-07-04 02:04:03,852] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] 02:04:03,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:04:03,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-04_02-04-03.log] [testng] 02:04:03,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dcc0d44 - End of configuration. [testng] [2024-07-04 02:04:03,891] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:04:03,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:04:03,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-04_02-04-03.log] [testng] 02:04:03,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ddd10f - End of configuration. [testng] [2024-07-04 02:04:03,912] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] 02:04:03,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:04:03,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:03,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-04_02-04-03.log] [testng] 02:04:03,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eb665fe - End of configuration. [testng] [2024-07-04 02:04:04,059] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:04:04,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:04:04,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:04,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-04_02-04-04.log] [testng] 02:04:04,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1f9dc7 - End of configuration. [testng] [2024-07-04 02:04:04,112] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] 02:04:04,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:04:04,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:04,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-04_02-04-04.log] [testng] 02:04:04,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79860d34 - End of configuration. [testng] [2024-07-04 02:04:04,136] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] 02:04:04,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:04:04,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:04,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-04_02-04-04.log] [testng] 02:04:04,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788e3003 - End of configuration. [testng] [2024-07-04 02:04:04,157] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] 02:04:04,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:04:04,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:04,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-04_02-04-04.log] [testng] 02:04:04,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203ed516 - End of configuration. [testng] [2024-07-04 02:04:05,659] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-07-04 02:04:05,678] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-07-04 02:04:05,697] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-07-04 02:04:05,710] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-07-04 02:04:05,731] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-07-04 02:04:05,743] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-07-04 02:04:05,762] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-07-04 02:04:06,121] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-07-04 02:04:06,156] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-07-04 02:04:06,228] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-07-04 02:04:06,257] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-07-04 02:04:06,287] [pool-1-thread-9] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-07-04 02:04:06,337] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-07-04 02:04:06,507] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-07-04 02:04:06,568] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-07-04 02:04:06,649] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-07-04 02:04:06,660] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-07-04 02:04:06,699] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-07-04 02:04:06,850] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-07-04 02:04:06,918] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-07-04 02:04:06,944] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-07-04 02:04:06,988] [pool-1-thread-2] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-07-04 02:04:07,015] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-07-04 02:04:07,103] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-07-04 02:04:07,124] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-07-04 02:04:07,203] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-07-04 02:04:07,232] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-07-04 02:04:07,320] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-07-04 02:04:07,378] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-07-04 02:04:07,398] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-07-04 02:04:07,505] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-07-04 02:04:07,631] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-07-04 02:04:07,697] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-07-04 02:04:07,712] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-07-04 02:04:07,730] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-07-04 02:04:07,738] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-07-04 02:04:07,800] [pool-1-thread-11] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-07-04 02:04:07,842] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-07-04 02:04:07,896] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-07-04 02:04:07,910] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-07-04 02:04:08,040] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-07-04 02:04:08,064] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-07-04 02:04:08,150] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-07-04 02:04:08,158] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-07-04 02:04:08,218] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-07-04 02:04:08,235] [pool-1-thread-3] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-07-04 02:04:08,264] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-07-04 02:04:08,335] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-07-04 02:04:08,370] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-07-04 02:04:08,392] [pool-1-thread-11] Initializing /data/steve/FITS/M104.fits: [testng] [2024-07-04 02:04:08,402] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-07-04 02:04:08,465] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-07-04 02:04:08,580] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-07-04 02:04:08,648] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-07-04 02:04:08,694] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-07-04 02:04:08,826] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-07-04 02:04:08,852] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-07-04 02:04:08,874] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-07-04 02:04:08,889] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-07-04 02:04:08,922] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-07-04 02:04:08,959] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-07-04 02:04:09,039] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-07-04 02:04:09,055] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-07-04 02:04:09,102] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-07-04 02:04:09,115] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-07-04 02:04:09,247] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-07-04 02:04:09,280] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-07-04 02:04:09,414] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-07-04 02:04:09,435] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-07-04 02:04:09,445] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-07-04 02:04:09,467] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-07-04 02:04:09,540] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-07-04 02:04:09,613] [pool-1-thread-12] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-07-04 02:04:09,621] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-07-04 02:04:09,633] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-07-04 02:04:09,664] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-07-04 02:04:09,676] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-07-04 02:04:09,721] [pool-1-thread-2] Initializing /data/steve/FITS/M13.fits: [testng] [2024-07-04 02:04:09,725] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-07-04 02:04:09,748] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-07-04 02:04:09,819] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-07-04 02:04:09,884] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-07-04 02:04:09,926] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-07-04 02:04:09,946] [pool-1-thread-5] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-07-04 02:04:09,999] [pool-1-thread-2] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-07-04 02:04:10,043] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-07-04 02:04:10,054] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-07-04 02:04:10,089] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-07-04 02:04:10,129] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-07-04 02:04:10,183] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-07-04 02:04:10,205] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-07-04 02:04:10,216] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-07-04 02:04:10,340] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-07-04 02:04:10,368] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-07-04 02:04:10,397] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-07-04 02:04:10,455] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-07-04 02:04:10,498] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-07-04 02:04:10,553] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-07-04 02:04:10,636] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-07-04 02:04:10,675] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-07-04 02:04:10,690] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-07-04 02:04:10,725] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-07-04 02:04:10,756] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-07-04 02:04:10,909] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-07-04 02:04:11,023] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-07-04 02:04:11,055] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-07-04 02:04:11,070] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-07-04 02:04:11,103] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-07-04 02:04:11,123] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-07-04 02:04:11,129] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-07-04 02:04:11,146] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-07-04 02:04:11,174] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-07-04 02:04:11,238] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-07-04 02:04:11,263] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-07-04 02:04:11,322] [pool-1-thread-1] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-07-04 02:04:11,383] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-07-04 02:04:11,408] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-07-04 02:04:11,448] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-07-04 02:04:11,473] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-07-04 02:04:11,485] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-07-04 02:04:11,607] [pool-1-thread-6] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-07-04 02:04:11,615] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-07-04 02:04:11,631] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-07-04 02:04:11,654] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-07-04 02:04:11,773] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-07-04 02:04:11,805] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-07-04 02:04:11,811] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-07-04 02:04:11,849] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-07-04 02:04:11,887] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-07-04 02:04:11,925] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-07-04 02:04:12,000] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-07-04 02:04:12,036] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-07-04 02:04:12,068] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-07-04 02:04:12,125] [pool-1-thread-7] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-07-04 02:04:12,171] [pool-1-thread-1] Initializing /data/steve/FITS/M51.fits: [testng] [2024-07-04 02:04:12,174] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-07-04 02:04:12,183] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-07-04 02:04:12,229] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-07-04 02:04:12,276] [pool-1-thread-9] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-07-04 02:04:12,332] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-07-04 02:04:12,357] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-07-04 02:04:12,394] [pool-1-thread-12] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-07-04 02:04:12,440] [pool-1-thread-4] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-07-04 02:04:12,469] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-07-04 02:04:12,506] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-07-04 02:04:12,516] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-07-04 02:04:12,565] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-07-04 02:04:12,581] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS