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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12194184749075681907.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17368_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:21:48,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:48,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:21:48,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:48,479 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:48,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:48,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:48,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:48,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:48,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:48,480 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:48,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:48,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:48,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:48,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:48,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:48,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:48,830 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:48,830 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:48,830 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:48,831 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:48,831 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:21:48,832 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:21:48,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 352 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 01:21:48,850] [main] java.version = 1.8.0_342 [testng] 01:21:48,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:48,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:48,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_01-21-48.log] [testng] 01:21:48,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 01:21:48,928] [main] testng.directory = /data [testng] [2024-07-05 01:21:48,928] [main] testng.configDirectory = /config [testng] [2024-07-05 01:21:48,942] [main] testng.multiplier = 1.0 [testng] [2024-07-05 01:21:48,943] [main] testng.in-memory = false [testng] [2024-07-05 01:21:48,943] [main] testng.allow-missing = false [testng] [2024-07-05 01:21:48,943] [main] user.language = en [testng] [2024-07-05 01:21:48,943] [main] user.country = ${user.country} [testng] [2024-07-05 01:21:48,944] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 01:22:10,237] [main] ---------------------------------------- [testng] [2024-07-05 01:22:10,237] [main] Total files: 283 [testng] [2024-07-05 01:22:10,237] [main] Scan time: 21.293 s (75 ms/file) [testng] [2024-07-05 01:22:10,237] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 01:31:22,518] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 01:31:22,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:22,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:22,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_01-31-22.log] [testng] 01:31:22,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24b83447 - End of configuration. [testng] [2024-07-05 01:31:22,599] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:31:22,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:22,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:22,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_01-31-22.log] [testng] 01:31:22,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16e59f00 - End of configuration. [testng] [2024-07-05 01:31:22,667] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 01:31:22,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:22,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:22,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_01-31-22.log] [testng] 01:31:22,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed867db - End of configuration. [testng] [2024-07-05 01:31:22,772] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 01:31:22,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:22,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:22,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_01-31-22.log] [testng] 01:31:22,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ec99923 - End of configuration. [testng] [2024-07-05 01:31:23,431] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 01:31:23,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:23,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_01-31-23.log] [testng] 01:31:23,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fd3cd74 - End of configuration. [testng] [2024-07-05 01:31:23,479] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 01:31:23,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:23,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_01-31-23.log] [testng] 01:31:23,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e4fa8b6 - End of configuration. [testng] [2024-07-05 01:31:23,534] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 01:31:23,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:23,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_01-31-23.log] [testng] 01:31:23,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c961dbc - End of configuration. [testng] [2024-07-05 01:31:23,624] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 01:31:23,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:23,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_01-31-23.log] [testng] 01:31:23,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dc1553 - End of configuration. [testng] [2024-07-05 01:31:23,689] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 01:31:23,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:23,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_01-31-23.log] [testng] 01:31:23,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128caf7e - End of configuration. [testng] [2024-07-05 01:31:23,971] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:31:23,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:23,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:23,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_01-31-23.log] [testng] 01:31:23,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b7d819 - End of configuration. [testng] [2024-07-05 01:31:24,079] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:31:24,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:24,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:24,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_01-31-24.log] [testng] 01:31:24,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59236886 - End of configuration. [testng] [2024-07-05 01:31:24,101] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 01:31:24,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:24,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:24,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_01-31-24.log] [testng] 01:31:24,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4706bccf - End of configuration. [testng] [2024-07-05 01:31:26,845] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-07-05 01:31:27,275] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-07-05 01:31:27,323] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-07-05 01:31:27,501] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-07-05 01:31:27,559] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: [testng] [2024-07-05 01:31:27,587] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-07-05 01:31:27,890] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-07-05 01:31:27,946] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-07-05 01:31:28,819] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-07-05 01:31:29,016] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-07-05 01:31:29,375] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-07-05 01:31:29,435] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-07-05 01:31:33,504] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-07-05 01:31:33,575] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-07-05 01:31:34,054] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-07-05 01:31:34,212] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-07-05 01:31:34,446] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-07-05 01:31:34,922] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-07-05 01:31:35,089] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-07-05 01:31:35,300] [pool-1-thread-5] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-07-05 01:31:35,763] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-07-05 01:31:35,836] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-07-05 01:31:36,105] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-07-05 01:31:36,618] [pool-1-thread-6] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-07-05 01:31:37,282] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-07-05 01:31:37,563] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-07-05 01:32:08,091] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-07-05 01:32:08,505] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-07-05 01:32:09,616] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-07-05 01:32:09,808] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-07-05 01:32:10,173] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-07-05 01:32:10,220] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-07-05 01:32:10,515] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-07-05 01:32:10,941] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-07-05 01:32:11,244] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-07-05 01:32:11,355] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-07-05 01:32:11,681] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-07-05 01:32:11,834] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-07-05 01:32:12,841] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-07-05 01:32:12,930] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-07-05 01:32:13,990] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-07-05 01:32:14,136] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-07-05 01:32:14,198] 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01:32:19,036] [pool-1-thread-11] Initializing /data/qa-17919/f10187.oir: [testng] [2024-07-05 01:32:50,609] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-07-05 01:32:51,030] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir: [testng] [2024-07-05 01:32:51,373] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-07-05 01:32:51,773] [pool-1-thread-7] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-07-05 01:32:52,686] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-07-05 01:32:52,861] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-07-05 01:32:53,004] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-07-05 01:32:53,171] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-07-05 01:32:55,012] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-07-05 01:32:55,339] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-07-05 01:32:56,325] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-07-05 01:32:56,641] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-07-05 01:32:56,769] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-07-05 01:32:57,015] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-07-05 01:32:57,150] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-07-05 01:32:59,072] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-07-05 01:33:00,696] [pool-1-thread-12] Initializing 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01:34:14,717] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-07-05 01:34:15,887] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-07-05 01:34:16,811] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-07-05 01:34:17,099] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-07-05 01:34:17,673] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-07-05 01:34:17,965] [pool-1-thread-10] Initializing /data/qa-17917/f10010.oir: [testng] [2024-07-05 01:35:12,065] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-07-05 01:35:12,348] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-07-05 01:35:17,747] [pool-1-thread-9] Initializing 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[2024-07-05 01:35:42,514] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-07-05 01:35:43,630] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-07-05 01:36:01,029] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-07-05 01:36:09,053] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-07-05 01:36:11,823] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-07-05 01:36:12,251] [pool-1-thread-1] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-07-05 01:36:13,377] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-07-05 01:36:13,475] [pool-1-thread-1] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-07-05 01:36:15,713] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-07-05 01:36:16,844] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-07-05 01:36:21,860] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-07-05 01:36:22,071] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-07-05 01:36:32,626] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-07-05 01:36:33,524] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-07-05 01:36:34,191] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-07-05 01:36:34,696] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-07-05 01:36:35,285] [pool-1-thread-12] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-07-05 01:36:36,114] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-07-05 01:36:36,963] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-07-05 01:36:38,234] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-07-05 01:36:38,973] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-07-05 01:36:40,282] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-07-05 01:36:40,595] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-07-05 01:36:41,514] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-07-05 01:36:43,393] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-07-05 01:36:43,920] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-07-05 01:36:45,179] [pool-1-thread-1] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-07-05 01:36:45,430] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-07-05 01:36:46,262] [pool-1-thread-1] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-07-05 01:36:50,242] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-07-05 01:36:51,677] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-07-05 01:36:53,658] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-07-05 01:36:53,899] [pool-1-thread-7] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-07-05 01:38:57,158] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-07-05 01:39:31,857] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-07-05 01:39:32,605] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-07-05 01:39:33,702] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-07-05 01:39:35,158] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-07-05 01:39:37,064] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-07-05 01:39:38,241] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-07-05 01:39:39,059] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-07-05 01:39:40,199] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-07-05 01:39:46,798] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-07-05 01:39:54,440] [pool-1-thread-1] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-07-05 01:39:56,724] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-07-05 01:39:58,013] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-07-05 01:39:59,867] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-07-05 01:40:02,220] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-07-05 01:40:15,951] [pool-1-thread-1] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-07-05 01:40:17,265] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-07-05 01:40:18,296] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-07-05 01:40:18,552] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-07-05 01:40:19,663] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-07-05 01:40:20,895] [pool-1-thread-2] Initializing /data/qa-16871/Clipboard.tif: [testng] 02:32:52,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:32:52,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:52,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_02-32-52.log] [testng] 02:32:52,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 71 minutes 7 seconds Finished: SUCCESS